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Sample GSM67809 Query DataSets for GSM67809
Status Public on Nov 30, 2005
Title MicMa263_Agilent
Sample type RNA
 
Channel 1
Source name MicMa263_Agilent with Cy5
Organism Homo sapiens
Characteristics early stage, breast carcinoma
Extracted molecule total RNA
Extraction protocol not provided
Label Cy5
Label protocol Amplified and labeled according to standard Agilent protocols
 
Channel 2
Source name Universal Human Reference (Stratagene) with Cy3
Organism Homo sapiens
Characteristics Common Reference: Universal Human Reference RNA sample (Stratagene)
Extracted molecule total RNA
Extraction protocol not provided
Label Cy3
Label protocol Amplified and labeled according to standard Agilent protocols
 
 
Hybridization protocol cRNA hybridized according to standard Agilent protocols
Scan protocol arrays were scanned according to standard Agilent protocols
Description biopsy of breast carcinoma
Data processing Data processed with FeatureExtraction v7.5.1
 
Submission date Aug 08, 2005
Last update date Feb 23, 2008
Contact name Yulei Wang
E-mail(s) wangyy@appliedbiosystems.com
Organization name Applied Biosystems
Street address 850 Lincoln Centre Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL1708
Series (1)
GSE3155 Gene expression profiling of the 20 human early breast carcinomas by three miaroarray platforms

Data table header descriptions
ID_REF refers to ID column in the platform table
VALUE Log10 Ratio of normalized Cy5 (red) signal to normalized Cy3 (green) signal (intra array by loess, inter array to same median intensity of 1000)
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gMeanSignal raw Cy3 (green) signal intensity
rMeanSignal raw Cy5 (red) signal intensity

Data table
ID_REF VALUE gProcessedSignal rProcessedSignal gMeanSignal rMeanSignal
3 -0.131064781 195.0371 144.2289 98.90323 69.93548
4 -0.289285931 319.3152 164.0339 115.2917 73.54167
5 -0.157992838 847.257 588.874 181.1 139.8
6 -0.336174657 197.2577 90.96185 100.1379 62.41379
8 -0.541256736 260.2099 74.82851 109.4815 60.37037
9 -0.427361684 230.5139 86.16589 105 61.88889
10 -0.216912051 244.1866 148.1869 105.6429 70.89286
12 0.121367251 1700.962 2249.375 288.3333 398.9
13 -0.298997482 194.3415 97.62658 99.75862 63.41379
15 -0.425461332 123.6697 46.43036 90.19231 56.38462
16 -0.517188508 119.7893 36.41075 90.03571 51.85714
17 -0.371481471 284.1986 120.8204 111.7667 67.16667
18 -0.242873237 419.4789 239.7932 127.7667 85.56667
19 0.144399943 3173.42 4425.144 467.4828 752.6552
20 -0.071525841 1616.6722 1383.99834 287.84051 264.9531
22 -0.372500189 81.11833 34.40478 83.84615 54.76923
23 -0.270754201 3959.0813 2136.44469 581.12922 391.35677
24 0.312602215 1015.563 2085.975 202.5172 370
25 0.07268287 3371.205 3985.365 492.7241 682.6207
26 -0.288744899 215.6955 110.9421 103 65.57143

Total number of rows: 40492

Table truncated, full table size 2068 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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