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Sample GSM685472 Query DataSets for GSM685472
Status Public on Apr 18, 2012
Title Uveal melanoma 9
Sample type RNA
 
Source name Uveal melanoma
Organism Homo sapiens
Characteristics tissue: uveal melanoma
gender: male
eye: right
Extracted molecule total RNA
Extraction protocol Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Total RNA was extracted from the tissue lysate using an miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Data processing Affymetrix Expression Console
 
Submission date Mar 04, 2011
Last update date Apr 18, 2012
Contact name Valentina Mirisola
E-mail(s) valentina.mirisola@istge.it
Organization name National Cancer Institute
Department Functiona Genomics
Street address Largo Benzi 10
City Genova
ZIP/Postal code 16132
Country Italy
 
Platform ID GPL570
Series (1)
GSE27831 Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression

Data table header descriptions
ID_REF
VALUE ExpressionStat 5.0
ABS_CALL indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 574.378 P 0.000972149
AFFX-BioB-M_at 816.471 P 0.000856509
AFFX-BioB-3_at 596.156 P 0.000195116
AFFX-BioC-5_at 1480.34 P 9.4506e-05
AFFX-BioC-3_at 1973.79 P 4.42873e-05
AFFX-BioDn-5_at 3778.87 P 4.42873e-05
AFFX-BioDn-3_at 8625.49 P 0.00010954
AFFX-CreX-5_at 19210.8 P 5.16732e-05
AFFX-CreX-3_at 24828.5 P 4.42873e-05
AFFX-DapX-5_at 18.8674 A 0.559354
AFFX-DapX-M_at 61.816 A 0.5
AFFX-DapX-3_at 11.7992 A 0.814869
AFFX-LysX-5_at 31.5106 A 0.686277
AFFX-LysX-M_at 8.96245 A 0.737173
AFFX-LysX-3_at 21.1751 A 0.147939
AFFX-PheX-5_at 2.25392 A 0.998407
AFFX-PheX-M_at 5.8608 A 0.997133
AFFX-PheX-3_at 33.2678 A 0.455413
AFFX-ThrX-5_at 46.2854 A 0.544587
AFFX-ThrX-M_at 4.42048 A 0.976071

Total number of rows: 54675

Table truncated, full table size 1632 Kbytes.




Supplementary file Size Download File type/resource
GSM685472_MU9.CEL.gz 4.6 Mb (ftp)(http) CEL
GSM685472_MU9.CHP.gz 297.5 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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