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Sample GSM685475 Query DataSets for GSM685475
Status Public on Apr 18, 2012
Title Uveal melanoma 12
Sample type RNA
 
Source name Uveal melanoma
Organism Homo sapiens
Characteristics tissue: uveal melanoma
gender: female
eye: left
Extracted molecule total RNA
Extraction protocol Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Total RNA was extracted from the tissue lysate using an miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Data processing Affymetrix Expression Console
 
Submission date Mar 04, 2011
Last update date Apr 18, 2012
Contact name Valentina Mirisola
E-mail(s) valentina.mirisola@istge.it
Organization name National Cancer Institute
Department Functiona Genomics
Street address Largo Benzi 10
City Genova
ZIP/Postal code 16132
Country Italy
 
Platform ID GPL570
Series (1)
GSE27831 Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression

Data table header descriptions
ID_REF
VALUE ExpressionStat 5.0
ABS_CALL indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1009.21 P 0.000753643
AFFX-BioB-M_at 1240 P 0.000296708
AFFX-BioB-3_at 811.547 P 0.00010954
AFFX-BioC-5_at 2126.08 P 5.16732e-05
AFFX-BioC-3_at 2820.14 P 5.16732e-05
AFFX-BioDn-5_at 4212.4 P 4.42873e-05
AFFX-BioDn-3_at 11334.8 P 0.000126798
AFFX-CreX-5_at 27639.2 P 5.16732e-05
AFFX-CreX-3_at 36126.9 P 4.42873e-05
AFFX-DapX-5_at 1.83804 A 0.937071
AFFX-DapX-M_at 17.2419 A 0.724871
AFFX-DapX-3_at 3.78692 A 0.997725
AFFX-LysX-5_at 40.56 A 0.485109
AFFX-LysX-M_at 33.6711 A 0.737173
AFFX-LysX-3_at 31.3047 A 0.354441
AFFX-PheX-5_at 7.34008 A 0.852082
AFFX-PheX-M_at 44.342 A 0.485105
AFFX-PheX-3_at 43.3478 A 0.645547
AFFX-ThrX-5_at 38.516 A 0.772364
AFFX-ThrX-M_at 35.1652 A 0.425956

Total number of rows: 54675

Table truncated, full table size 1624 Kbytes.




Supplementary file Size Download File type/resource
GSM685475_MU12.CEL.gz 4.2 Mb (ftp)(http) CEL
GSM685475_MU12.CHP.gz 300.9 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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