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Sample GSM685523 Query DataSets for GSM685523
Status Public on Apr 18, 2012
Title Uveal melanoma 15
Sample type RNA
 
Source name Uveal melanoma
Organism Homo sapiens
Characteristics tissue: uveal melanoma
gender: male
eye: left
Extracted molecule total RNA
Extraction protocol Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Total RNA was extracted from the tissue lysate using an miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Data processing Affymetrix Expression Console
 
Submission date Mar 04, 2011
Last update date Apr 18, 2012
Contact name Valentina Mirisola
E-mail(s) valentina.mirisola@istge.it
Organization name National Cancer Institute
Department Functiona Genomics
Street address Largo Benzi 10
City Genova
ZIP/Postal code 16132
Country Italy
 
Platform ID GPL570
Series (1)
GSE27831 Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression

Data table header descriptions
ID_REF
VALUE ExpressionStat 5.0
ABS_CALL indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 763.827 P 0.000856509
AFFX-BioB-M_at 989.099 P 0.000753643
AFFX-BioB-3_at 615.018 P 4.42873e-05
AFFX-BioC-5_at 974.955 P 0.000753643
AFFX-BioC-3_at 1179.63 P 4.42873e-05
AFFX-BioDn-5_at 4617.79 P 4.42873e-05
AFFX-BioDn-3_at 9431.63 P 0.00141043
AFFX-CreX-5_at 21763.7 P 4.42873e-05
AFFX-CreX-3_at 26063.1 P 4.42873e-05
AFFX-DapX-5_at 8.17451 A 0.71229
AFFX-DapX-M_at 6.82673 A 0.83416
AFFX-DapX-3_at 44.0565 A 0.60308
AFFX-LysX-5_at 41.9535 A 0.195266
AFFX-LysX-M_at 63.3501 A 0.574038
AFFX-LysX-3_at 42.4268 A 0.313708
AFFX-PheX-5_at 16.6728 A 0.617411
AFFX-PheX-M_at 12.2778 A 0.910541
AFFX-PheX-3_at 38.7293 A 0.48511
AFFX-ThrX-5_at 7.68454 A 0.998409
AFFX-ThrX-M_at 6.89322 A 0.760937

Total number of rows: 54675

Table truncated, full table size 1624 Kbytes.




Supplementary file Size Download File type/resource
GSM685523_MU15.CEL.gz 4.7 Mb (ftp)(http) CEL
GSM685523_MU15.CHP.gz 296.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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