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GEO accession:
Sample GSM685652
Query DataSets for GSM685652
Status
Public on Apr 18, 2012
Title
Uveal melanoma 7
Sample type
RNA
Source name
Uveal melanoma
Organism
Homo sapiens
Characteristics
tissue: uveal melanoma
gender: female
eye: left
Extracted molecule
total RNA
Extraction protocol
Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Label
biotin
Label protocol
Standard Affymetrix procedures
Hybridization protocol
Standard Affymetrix procedures
Scan protocol
Standard Affymetrix procedures
Data processing
Affymetrix Expression Console
Submission date
Mar 04, 2011
Last update date
Apr 18, 2012
Contact name
Valentina Mirisola
E-mail(s)
valentina.mirisola@istge.it
Organization name
National Cancer Institute
Department
Functiona Genomics
Street address
Largo Benzi 10
City
Genova
ZIP/Postal code
16132
Country
Italy
Platform ID
GPL570
Series (1)
GSE27831
Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression
Data table header descriptions
ID_REF
VALUE
ExpressionStat 5.0
ABS_CALL
indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
528.047
P
0.000581214
AFFX-BioB-M_at
722.843
P
4.42873e-05
AFFX-BioB-3_at
425.808
P
6.99729e-05
AFFX-BioC-5_at
1420.02
P
4.42873e-05
AFFX-BioC-3_at
1701.43
P
5.16732e-05
AFFX-BioDn-5_at
3881.59
P
4.42873e-05
AFFX-BioDn-3_at
6819.54
P
4.42873e-05
AFFX-CreX-5_at
16441.7
P
5.16732e-05
AFFX-CreX-3_at
19634.1
P
4.42873e-05
AFFX-DapX-5_at
37.7775
A
0.0676444
AFFX-DapX-M_at
9.58504
A
0.883908
AFFX-DapX-3_at
4.96897
A
0.904333
AFFX-LysX-5_at
19.427
A
0.368438
AFFX-LysX-M_at
9.52048
A
0.659352
AFFX-LysX-3_at
10.3776
A
0.52976
AFFX-PheX-5_at
2.61654
A
0.990663
AFFX-PheX-M_at
4.73652
A
0.976071
AFFX-PheX-3_at
11.2336
A
0.659339
AFFX-ThrX-5_at
2.91453
A
0.897835
AFFX-ThrX-M_at
5.55101
A
0.83416
Total number of rows:
54675
Table truncated, full table size
1639 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM685652_MU_7.CEL.gz
4.4 Mb
(ftp)
(http)
CEL
GSM685652_MU_7.CHP.gz
299.8 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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