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Sample GSM686962 Query DataSets for GSM686962
Status Public on Apr 18, 2012
Title Uveal melanoma 22
Sample type RNA
 
Source name Uveal melanoma
Organism Homo sapiens
Characteristics tissue: uveal melanoma
gender: male
eye: right
Extracted molecule total RNA
Extraction protocol Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Total RNA was extracted from the tissue lysate using an miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Data processing Affymetrix Expression Console
 
Submission date Mar 08, 2011
Last update date Apr 18, 2012
Contact name Valentina Mirisola
E-mail(s) valentina.mirisola@istge.it
Organization name National Cancer Institute
Department Functiona Genomics
Street address Largo Benzi 10
City Genova
ZIP/Postal code 16132
Country Italy
 
Platform ID GPL570
Series (1)
GSE27831 Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression

Data table header descriptions
ID_REF
VALUE ExpressionStat 5.0
ABS_CALL indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 576.087 P 0.000972149
AFFX-BioB-M_at 659.933 P 0.000126798
AFFX-BioB-3_at 461.329 P 0.00141043
AFFX-BioC-5_at 1277.69 P 0.000169227
AFFX-BioC-3_at 1577.14 P 4.42873e-05
AFFX-BioDn-5_at 2730.15 P 4.42873e-05
AFFX-BioDn-3_at 7596.61 P 5.16732e-05
AFFX-CreX-5_at 16358.1 P 5.16732e-05
AFFX-CreX-3_at 22761.8 P 4.42873e-05
AFFX-DapX-5_at 73.5941 A 0.275146
AFFX-DapX-M_at 23.0263 A 0.904333
AFFX-DapX-3_at 7.65864 A 0.988616
AFFX-LysX-5_at 6.56325 A 0.937087
AFFX-LysX-M_at 29.7599 A 0.852061
AFFX-LysX-3_at 51.808 A 0.102165
AFFX-PheX-5_at 41.6862 A 0.544587
AFFX-PheX-M_at 10.7834 A 0.945787
AFFX-PheX-3_at 61.5165 A 0.340661
AFFX-ThrX-5_at 99.5259 A 0.440646
AFFX-ThrX-M_at 6.18394 A 0.981719

Total number of rows: 54675

Table truncated, full table size 1622 Kbytes.




Supplementary file Size Download File type/resource
GSM686962_MU_22.CEL.gz 4.7 Mb (ftp)(http) CEL
GSM686962_MU_22.CHP.gz 490.1 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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