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Sample GSM686985 Query DataSets for GSM686985
Status Public on Apr 18, 2012
Title Uveal melanoma 31
Sample type RNA
 
Source name Uveal melanoma
Organism Homo sapiens
Characteristics tissue: uveal melanoma
gender: female
eye: right
Extracted molecule total RNA
Extraction protocol Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Total RNA was extracted from the tissue lysate using an miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Data processing Affymetrix Expression Console
 
Submission date Mar 08, 2011
Last update date Apr 18, 2012
Contact name Valentina Mirisola
E-mail(s) valentina.mirisola@istge.it
Organization name National Cancer Institute
Department Functiona Genomics
Street address Largo Benzi 10
City Genova
ZIP/Postal code 16132
Country Italy
 
Platform ID GPL570
Series (1)
GSE27831 Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression

Data table header descriptions
ID_REF
VALUE ExpressionStat 5.0
ABS_CALL indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 425.497 P 0.000753643
AFFX-BioB-M_at 648.783 P 0.000856509
AFFX-BioB-3_at 332.825 P 0.000126798
AFFX-BioC-5_at 1337.47 P 0.000195116
AFFX-BioC-3_at 1665.6 P 4.42873e-05
AFFX-BioDn-5_at 3067.54 P 4.42873e-05
AFFX-BioDn-3_at 5368.78 P 0.00010954
AFFX-CreX-5_at 13911.9 P 5.16732e-05
AFFX-CreX-3_at 19352.8 P 4.42873e-05
AFFX-DapX-5_at 4.2965 A 0.852061
AFFX-DapX-M_at 39.3208 A 0.470241
AFFX-DapX-3_at 9.90629 A 0.916408
AFFX-LysX-5_at 46.3937 A 0.205732
AFFX-LysX-M_at 6.39119 A 0.957038
AFFX-LysX-3_at 3.10353 A 0.39692
AFFX-PheX-5_at 36.1032 A 0.41138
AFFX-PheX-M_at 4.49086 A 0.971543
AFFX-PheX-3_at 10.7022 A 0.852061
AFFX-ThrX-5_at 38.79 A 0.699394
AFFX-ThrX-M_at 5.08795 A 0.981719

Total number of rows: 54675

Table truncated, full table size 1627 Kbytes.




Supplementary file Size Download File type/resource
GSM686985_MU_31.CEL.gz 5.1 Mb (ftp)(http) CEL
GSM686985_MU_31.CHP.gz 488.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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