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Sample GSM686988 Query DataSets for GSM686988
Status Public on Apr 18, 2012
Title Uveal melanoma 34
Sample type RNA
 
Source name Uveal melanoma
Organism Homo sapiens
Characteristics tissue: uveal melanoma
gender: male
eye: right
Extracted molecule total RNA
Extraction protocol Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Total RNA was extracted from the tissue lysate using an miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Data processing Affymetrix Expression Console
 
Submission date Mar 08, 2011
Last update date Apr 18, 2012
Contact name Valentina Mirisola
E-mail(s) valentina.mirisola@istge.it
Organization name National Cancer Institute
Department Functiona Genomics
Street address Largo Benzi 10
City Genova
ZIP/Postal code 16132
Country Italy
 
Platform ID GPL570
Series (1)
GSE27831 Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression

Data table header descriptions
ID_REF
VALUE ExpressionStat 5.0
ABS_CALL indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 799.324 P 0.000972149
AFFX-BioB-M_at 880.743 P 0.000662269
AFFX-BioB-3_at 500.505 P 5.16732e-05
AFFX-BioC-5_at 1795.59 P 7.00668e-05
AFFX-BioC-3_at 2591.99 P 4.42873e-05
AFFX-BioDn-5_at 4157.51 P 4.42873e-05
AFFX-BioDn-3_at 8032.47 P 9.4506e-05
AFFX-CreX-5_at 18741.6 P 5.16732e-05
AFFX-CreX-3_at 27211.1 P 4.42873e-05
AFFX-DapX-5_at 39.7929 A 0.287743
AFFX-DapX-M_at 11.378 A 0.916408
AFFX-DapX-3_at 9.20495 A 0.969024
AFFX-LysX-5_at 38.2746 A 0.262827
AFFX-LysX-M_at 57.5158 A 0.470241
AFFX-LysX-3_at 7.16084 A 0.645547
AFFX-PheX-5_at 55.3202 A 0.470241
AFFX-PheX-M_at 3.15349 A 0.937071
AFFX-PheX-3_at 79.0134 A 0.455413
AFFX-ThrX-5_at 10.2032 A 0.921998
AFFX-ThrX-M_at 57.8948 A 0.455413

Total number of rows: 54675

Table truncated, full table size 1625 Kbytes.




Supplementary file Size Download File type/resource
GSM686988_MU_34.CEL.gz 5.0 Mb (ftp)(http) CEL
GSM686988_MU_34.CHP.gz 490.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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