NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM687001 Query DataSets for GSM687001
Status Public on Apr 18, 2012
Title Uveal melanoma 2
Sample type RNA
 
Source name Uveal melanoma
Organism Homo sapiens
Characteristics tissue: uveal melanoma
gender: female
eye: left
Extracted molecule total RNA
Extraction protocol Tumour samples were homogenized in the tissue lyser Mixer Mill in total RNA extraction lysis buffer Qiazol (Qiagen).
Total RNA was extracted from the tissue lysate using an miRNeasy mini kit (Qiagen).
Label biotin
Label protocol Standard Affymetrix procedures
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol Standard Affymetrix procedures
Data processing Affymetrix Expression Console
 
Submission date Mar 08, 2011
Last update date Apr 18, 2012
Contact name Valentina Mirisola
E-mail(s) valentina.mirisola@istge.it
Organization name National Cancer Institute
Department Functiona Genomics
Street address Largo Benzi 10
City Genova
ZIP/Postal code 16132
Country Italy
 
Platform ID GPL570
Series (1)
GSE27831 Syntenin-1 is expressed in uveal melanoma and correlates with metastatic progression

Data table header descriptions
ID_REF
VALUE ExpressionStat 5.0
ABS_CALL indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 625.522 P 0.000856509
AFFX-BioB-M_at 629.599 P 0.00110197
AFFX-BioB-3_at 437.732 P 0.000972149
AFFX-BioC-5_at 1222.34 P 0.000340305
AFFX-BioC-3_at 1649 P 4.42873e-05
AFFX-BioDn-5_at 3342.06 P 4.42873e-05
AFFX-BioDn-3_at 6568.66 P 0.000146581
AFFX-CreX-5_at 16201.6 P 5.16732e-05
AFFX-CreX-3_at 22113.5 P 4.42873e-05
AFFX-DapX-5_at 40.2981 A 0.0726999
AFFX-DapX-M_at 31.4675 A 0.712257
AFFX-DapX-3_at 34.3579 A 0.470241
AFFX-LysX-5_at 4.27809 A 0.724854
AFFX-LysX-M_at 10.3409 A 0.794268
AFFX-LysX-3_at 38.5245 A 0.165861
AFFX-PheX-5_at 47.5261 A 0.368438
AFFX-PheX-M_at 8.60241 A 0.945787
AFFX-PheX-3_at 34.2407 A 0.686277
AFFX-ThrX-5_at 14.9635 A 0.868639
AFFX-ThrX-M_at 7.44037 A 0.9273

Total number of rows: 54675

Table truncated, full table size 1629 Kbytes.




Supplementary file Size Download File type/resource
GSM687001_2_MU_2.CHP.gz 488.2 Kb (ftp)(http) CHP
GSM687001_MU_2.CEL.gz 5.1 Mb (ftp)(http) CEL
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap