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Status
Public on Jul 01, 2011
Title
P10, POST, AL lesional
Sample type
RNA
Source name
P10, POST, AL
Organism
Homo sapiens Characteristics
treatment: NB-UVB
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Kit protocol
Label
biotin
Label protocol
standard GeneChip Affymetrix protocol
Hybridization protocol
standard GeneChip Affymetrix protocol
Scan protocol
Hewlett–Packard Gene Array Scanner
Data processing
GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
Submission date
Mar 10, 2011
Last update date
Jul 01, 2011
Contact name
Mayte Suarez-Farinas
E-mail(s)
mayte.suarezfarinas@mssm.edu Organization name
Mount SinaiSchool of Medicine
Street address
1425 Madison Ave, L2-70C, Box 1077,
City
New York
State/province
NY
ZIP/Postal code
10075
Country
USA
Platform ID
GPL570 Series (1)
GSE27887 Reversal of Atopic Dermatitis with Narrow-Band UVB Phototherapy and Biomarkers for Therapeutic Response
Data table header descriptions ID_REF VALUE log2 GCRMA with an additional quantile normalization
Data table ID_REF VALUE 1007_s_at
11.43054799
1053_at
8.85339214
117_at
5.31753593
121_at
4.331765643
1255_g_at
2.14844556
1294_at
7.225351066
1316_at
3.386395448
1320_at
2.200149187
1405_i_at
6.071922651
1431_at
4.578374486
1438_at
7.393349768
1487_at
9.893730851
1494_f_at
2.14844556
1552256_a_at
10.4518554
1552257_a_at
10.10344773
1552258_at
2.150304809
1552261_at
2.14844556
1552263_at
6.660554991
1552264_a_at
5.551746776
1552266_at
2.149258984
54675 1196 Kbytes .Supplementary file Size Download File type/resource GSM688743_8_HGU133_plus_2.0_Irma_022510.CEL.gz
5.2 Mb
(ftp) (http) CEL
Processed data included within Sample table
