|
| Status |
Public on Jul 01, 2011 |
| Title |
P1, PRE, ANL non-lesional |
| Sample type |
RNA |
| |
|
| Source name |
P1, PRE, ANL
|
| Organism |
Homo sapiens |
| Characteristics |
treatment: NB-UVB
patient: P1
time: pre-treatment
tissue: non-lesional skin
scorad: 0
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen RNeasy Kit protocol
|
| Label |
biotin
|
| Label protocol |
standard GeneChip Affymetrix protocol
|
| |
|
| Hybridization protocol |
standard GeneChip Affymetrix protocol
|
| Scan protocol |
Hewlett–Packard Gene Array Scanner
|
| Data processing |
GCRMA (using gcrma package from R/Bioconductor). Each platform was preprocess separately, then merged. An extra quantile normalization was needed to normalized across platforms.
|
| |
|
| Submission date |
Mar 10, 2011 |
| Last update date |
Jul 01, 2011 |
| Contact name |
Mayte Suarez-Farinas |
| E-mail(s) |
mayte.suarezfarinas@mssm.edu
|
| Organization name |
Mount SinaiSchool of Medicine
|
| Street address |
1425 Madison Ave, L2-70C, Box 1077,
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10075 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE27887 |
Reversal of Atopic Dermatitis with Narrow-Band UVB Phototherapy and Biomarkers for Therapeutic Response |
|
