GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM68904
Query DataSets for GSM68904
Status
Public on Nov 18, 2005
Title
27 h salt stressed replicate 1
Sample type
RNA
Source name
shoot tissue
Organism
Hordeum vulgare
Characteristics
cv. Morex
Extracted molecule
total RNA
Extraction protocol
Approximately 12 plants were used for RNA extraction
Label
biotin
Label protocol
Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
salt stressed
Data processing
GCOS 1.2
Submission date
Aug 09, 2005
Last update date
Aug 09, 2005
Contact name
HARKAMAL WALIA
E-mail(s)
waliah02@student.ucr.edu
Phone
951-827-3808
Organization name
University of California
Street address
Department of Botany & Plant Sciecnes
City
Riverside
State/province
CA
ZIP/Postal code
92521
Country
USA
Platform ID
GPL1340
Series (1)
GSE3097
Barley1 salinity stress study
Data table header descriptions
ID_REF
VALUE
GCOS12-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
162.2
M
0.054213
AFFX-BioB-M_at
140.1
P
0.039661
AFFX-BioB-3_at
95
P
0.009337
AFFX-BioC-5_at
384.5
P
0.001796
AFFX-BioC-3_at
263.4
P
0.004998
AFFX-BioDn-5_at
293
P
0.001593
AFFX-BioDn-3_at
2956
P
0.000258
AFFX-CreX-5_at
4120.3
P
0.000044
AFFX-CreX-3_at
8774.8
P
0.000044
AFFX-DapX-5_at
18.8
A
0.470241
AFFX-DapX-M_at
45
P
0.020022
AFFX-DapX-3_at
5
A
0.9273
AFFX-LysX-5_at
3.2
A
0.760937
AFFX-LysX-M_at
34.1
A
0.631562
AFFX-LysX-3_at
6.3
A
0.58862
AFFX-PheX-5_at
30.6
A
0.574038
AFFX-PheX-M_at
11.5
A
0.737173
AFFX-PheX-3_at
11.9
A
0.910522
AFFX-ThrX-5_at
10.3
A
0.883887
AFFX-ThrX-M_at
32.1
A
0.41138
Total number of rows:
22840
Table truncated, full table size
705 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
