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Status
Public on Aug 11, 2005
Title
Phage 2972-1st exp-7min
Sample type
RNA
Channel 1 Source name
Streptococcus thermophilus non-infected cell sample
Organism
Brussowvirus bv2972 Characteristics
non-infected cell sample
Extracted molecule
total RNA
Label
Cy3
Channel 2 Source name
Streptococcus thermophilus infected cell sample at 7 min post infection
Organism
Brussowvirus bv2972 Characteristics
infected cell sample at 7 min post infection
Extracted molecule
total RNA
Label
Cy5
Description
Custom microarray developed to study the gene expression of two S. thermophilus phages (DT1 and 2972) during infection. Gene expression was measured at nine time intervals (0, 2, 7, 12, 17, 22, 27, 32, 37 minutes) during phage infection. Non infected sample were compared to the infected sample at a specific time point.
Data processing
Log2 transformed normalized CH2/CH1 ratio
Submission date
Aug 10, 2005
Last update date
Aug 11, 2005
Contact name
Sylvain Moineau
E-mail(s)
martin.duplessis.1@ulaval.ca Phone
418 656-2131 ext 4236
Organization name
Université Laval
Department
Biochemistry and microbiology
Lab
Sylvain Moineau
Street address
City
Québec
State/province
Québec
ZIP/Postal code
G1K7P4
Country
Canada
Platform ID
GPL1939 Series (1)
GSE2476 Phages DT1 and 2972 gene expression study
Data table header descriptions ID_REF VALUE Log2 transformed normalized CH2/CH1 ratio
CH1_Norm_BackSubtr Normalized intensity value from non-infected sample
CH2_Norm_BackSubtr Normalized intensity value from infected sample (7 min post infection)
Data table ID_REF VALUE CH1_Norm_BackSubtr CH2_Norm_BackSubtr 1
1.709151433
381.885948
1248.646565
2
1.236997349
595.503571
1403.646273
3
1.570487958
576.803307
1713.13554
4
0.418705177
282.578804
377.7308018
5
1.723462203
340.006359
1122.796006
6
1.484848721
301.720032
844.4776291
7
-0.390855586
305.386291
232.9111514
8
2.323765373
267.51424
1339.275687
9
2.834843343
260.977013
1861.98053
10
0.386632447
282.951104
369.9127977
11
0.954778249
394.613312
764.8717555
12
1.061032014
372.609196
777.4205774
13
0.908029114
179.227211
336.3163234
14
2.988332304
267.555008
2123.199215
15
1.5977291
279.709824
846.5879919
16
0.971470075
531.25
1041.69499
17
2.163849361
445.624157
1996.881481
18
1.837949297
429.25581
1534.595962
19
3.010868302
248.549568
2003.43236
20
3.833834329
198.995411
2837.541309
279 10 Kbytes .Supplementary data files not provided
