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Sample GSM701772 Query DataSets for GSM701772
Status Public on Feb 21, 2012
Title T2_Post_YF_2_1_2C
Sample type RNA
 
Source name T2_Post_Fem_Young_SF1
Organism Homo sapiens
Characteristics subject: young female 2 (YF_2)
gender: female
age: Young (23±2y)
tissue: Vastus lateralis muscle
training state: Untrained
time point: 4hrs post exercise
fiber type: slow-twitch (MHC I)
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 5ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 05, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28392 Effects of resistance exercise on the transcriptome in MHC I and MHC IIa muscle fibers of young and old women

Data table header descriptions
ID_REF
VALUE MAS 5.0
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 10325.1 P 4.42873e-05
AFFX-BioB-M_at 22090.6 P 4.42873e-05
AFFX-BioB-3_at 17161.6 P 4.42873e-05
AFFX-BioC-5_at 38273.5 P 4.42873e-05
AFFX-BioC-3_at 26665.8 P 4.42873e-05
AFFX-BioDn-5_at 73864.4 P 4.42873e-05
AFFX-BioDn-3_at 101959 P 4.42873e-05
AFFX-CreX-5_at 193657 P 5.16732e-05
AFFX-CreX-3_at 197836 P 4.42873e-05
AFFX-DapX-5_at 11.5633 A 0.574038
AFFX-DapX-M_at 8.45562 A 0.986196
AFFX-DapX-3_at 60.0876 A 0.327079
AFFX-LysX-5_at 21.0957 A 0.455397
AFFX-LysX-M_at 87.5427 A 0.227636
AFFX-LysX-3_at 23.9817 A 0.824672
AFFX-PheX-5_at 18.9128 A 0.737173
AFFX-PheX-M_at 9.12607 A 0.843268
AFFX-PheX-3_at 18.4577 A 0.574038
AFFX-ThrX-5_at 93.131 A 0.239063
AFFX-ThrX-M_at 12.457 A 0.921998

Total number of rows: 54675

Table truncated, full table size 1640 Kbytes.




Supplementary file Size Download File type/resource
GSM701772_EA08017_89249_18_SFAGEX_YF_2_1_2C_H133+.CEL.gz 4.8 Mb (ftp)(http) CEL
GSM701772_EA08017_89249_18_SFAGEX_YF_2_1_2C_H133+.CHP.gz 296.5 Kb (ftp)(http) CHP
Processed data included within Sample table

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