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Sample GSM701810 Query DataSets for GSM701810
Status Public on Feb 21, 2012
Title T2_Post_YF_7_2A_7D
Sample type RNA
 
Source name T2_Post_Fem_Young_SF2a
Organism Homo sapiens
Characteristics subject: young female 7 (YF_7)
gender: female
age: Young (23±2y)
tissue: Vastus lateralis muscle
training state: Untrained
time point: 4hrs post exercise
fiber type: fast-twitch (MHC IIa)
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 5ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 05, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28392 Effects of resistance exercise on the transcriptome in MHC I and MHC IIa muscle fibers of young and old women

Data table header descriptions
ID_REF
VALUE MAS 5.0
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 7365.26 P 4.42873e-05
AFFX-BioB-M_at 15233.9 P 4.42873e-05
AFFX-BioB-3_at 12624.9 P 4.42873e-05
AFFX-BioC-5_at 28049.3 P 4.42873e-05
AFFX-BioC-3_at 18994.4 P 4.42873e-05
AFFX-BioDn-5_at 55948.8 P 4.42873e-05
AFFX-BioDn-3_at 76286.9 P 4.42873e-05
AFFX-CreX-5_at 145212 P 5.16732e-05
AFFX-CreX-3_at 142922 P 4.42873e-05
AFFX-DapX-5_at 9.7836 A 0.804734
AFFX-DapX-M_at 12.7798 A 0.916408
AFFX-DapX-3_at 66.6181 A 0.455413
AFFX-LysX-5_at 53.4642 A 0.102145
AFFX-LysX-M_at 50.0015 A 0.425962
AFFX-LysX-3_at 31.3243 A 0.559359
AFFX-PheX-5_at 95.2936 A 0.239063
AFFX-PheX-M_at 4.41351 A 0.932322
AFFX-PheX-3_at 29.2492 A 0.455413
AFFX-ThrX-5_at 14.3055 A 0.749204
AFFX-ThrX-M_at 5.87725 A 0.883908

Total number of rows: 54675

Table truncated, full table size 1644 Kbytes.




Supplementary file Size Download File type/resource
GSM701810_EA08017_89313_90_SFAGEX_YF_7_2A_7D_H133+.CEL.gz 5.0 Mb (ftp)(http) CEL
GSM701810_EA08017_89313_90_SFAGEX_YF_7_2A_7D_H133+.CHP.gz 295.3 Kb (ftp)(http) CHP
Processed data included within Sample table

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