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Sample GSM701817 Query DataSets for GSM701817
Status Public on Feb 21, 2012
Title T4_Post_YF_1_2A_1H
Sample type RNA
 
Source name T4_Post_Fem_Young_SF2a
Organism Homo sapiens
Characteristics subject: young female 1 (YF_1)
gender: female
age: Young (23±2y)
tissue: Vastus lateralis muscle
training state: Trained
time point: 4hrs post exercise
fiber type: fast-twitch (MHC IIa)
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 5ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 05, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28392 Effects of resistance exercise on the transcriptome in MHC I and MHC IIa muscle fibers of young and old women

Data table header descriptions
ID_REF
VALUE MAS 5.0
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 11508.8 P 4.42873e-05
AFFX-BioB-M_at 24592.8 P 4.42873e-05
AFFX-BioB-3_at 18300.1 P 4.42873e-05
AFFX-BioC-5_at 41699.7 P 4.42873e-05
AFFX-BioC-3_at 29408.2 P 4.42873e-05
AFFX-BioDn-5_at 81105.6 P 4.42873e-05
AFFX-BioDn-3_at 111129 P 4.42873e-05
AFFX-CreX-5_at 201574 P 5.16732e-05
AFFX-CreX-3_at 191275 P 4.42873e-05
AFFX-DapX-5_at 45.9608 A 0.52976
AFFX-DapX-M_at 15.8643 A 0.932322
AFFX-DapX-3_at 91.0747 A 0.354453
AFFX-LysX-5_at 94.6873 A 0.165861
AFFX-LysX-M_at 12.3141 A 0.969024
AFFX-LysX-3_at 29.2513 A 0.470241
AFFX-PheX-5_at 51.5748 A 0.5
AFFX-PheX-M_at 14.7573 A 0.804734
AFFX-PheX-3_at 26.7197 A 0.382599
AFFX-ThrX-5_at 66.3505 A 0.559359
AFFX-ThrX-M_at 22.512 A 0.41138

Total number of rows: 54675

Table truncated, full table size 1638 Kbytes.




Supplementary file Size Download File type/resource
GSM701817_EA08017_89238_7_SFAGEX_YF_1_2A_1H_H133+.CEL.gz 4.8 Mb (ftp)(http) CEL
GSM701817_EA08017_89238_7_SFAGEX_YF_1_2A_1H_H133+.CHP.gz 296.7 Kb (ftp)(http) CHP
Processed data included within Sample table

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