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Sample GSM702357 Query DataSets for GSM702357
Status Public on Feb 21, 2012
Title T1_Pre_Male_Young (81373)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Young
gender: Male
training state: Untrained
time point: Basal
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81373_AGEX_YM_T1_4_H133+.CHP
EA08017_81373_AGEX_YM_T1_4_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 6040.7 P 4.42873e-05
AFFX-BioB-M_at 11402.6 P 4.42873e-05
AFFX-BioB-3_at 8603.95 P 4.42873e-05
AFFX-BioC-5_at 20203.9 P 4.42873e-05
AFFX-BioC-3_at 14035.6 P 4.42873e-05
AFFX-BioDn-5_at 42258.4 P 4.42873e-05
AFFX-BioDn-3_at 60621.8 P 4.42873e-05
AFFX-CreX-5_at 124184 P 5.16732e-05
AFFX-CreX-3_at 119679 P 4.42873e-05
AFFX-DapX-5_at 31.0322 A 0.327079
AFFX-DapX-M_at 11.0742 A 0.883908
AFFX-DapX-3_at 7.25284 A 0.876428
AFFX-LysX-5_at 1.87818 A 0.966323
AFFX-LysX-M_at 4.47118 A 0.783476
AFFX-LysX-3_at 2.91549 A 0.860518
AFFX-PheX-5_at 42.5339 A 0.216524
AFFX-PheX-M_at 37.842 A 0.382599
AFFX-PheX-3_at 49.8459 A 0.195266
AFFX-ThrX-5_at 5.34155 A 0.937071
AFFX-ThrX-M_at 7.09508 A 0.783476

Total number of rows: 54675

Table truncated, full table size 1662 Kbytes.




Supplementary file Size Download File type/resource
GSM702357.CEL.gz 5.1 Mb (ftp)(http) CEL
GSM702357.CHP.gz 292.7 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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