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Sample GSM702360 Query DataSets for GSM702360
Status Public on Feb 21, 2012
Title T1_Pre_Male_Young (81412)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Young
gender: Male
training state: Untrained
time point: Basal
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81412_AGEX_YM_T1_14_H133+.CHP
EA08017_81412_AGEX_YM_T1_14_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 5743.29 P 4.42873e-05
AFFX-BioB-M_at 9836.1 P 4.42873e-05
AFFX-BioB-3_at 7912.17 P 4.42873e-05
AFFX-BioC-5_at 19131.3 P 4.42873e-05
AFFX-BioC-3_at 12564.2 P 4.42873e-05
AFFX-BioDn-5_at 39432.1 P 4.42873e-05
AFFX-BioDn-3_at 58026.6 P 4.42873e-05
AFFX-CreX-5_at 121504 P 5.16732e-05
AFFX-CreX-3_at 111367 P 4.42873e-05
AFFX-DapX-5_at 65.0218 A 0.0676614
AFFX-DapX-M_at 5.14925 A 0.910522
AFFX-DapX-3_at 8.87657 A 0.659352
AFFX-LysX-5_at 9.19626 A 0.58862
AFFX-LysX-M_at 48.6692 A 0.131361
AFFX-LysX-3_at 14.7493 A 0.659339
AFFX-PheX-5_at 42.4158 A 0.262827
AFFX-PheX-M_at 4.85892 A 0.973899
AFFX-PheX-3_at 20.9946 A 0.48511
AFFX-ThrX-5_at 4.99506 A 0.953533
AFFX-ThrX-M_at 17.9352 A 0.737173

Total number of rows: 54675

Table truncated, full table size 1660 Kbytes.




Supplementary file Size Download File type/resource
GSM702360.CEL.gz 5.0 Mb (ftp)(http) CEL
GSM702360.CHP.gz 293.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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