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Sample GSM702362 Query DataSets for GSM702362
Status Public on Feb 21, 2012
Title T1_Pre_Male_Young (81432)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Young
gender: Male
training state: Untrained
time point: Basal
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81432_AGEX_YM_T1_19_H133+.CHP
EA08017_81432_AGEX_YM_T1_19_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 6220.51 P 4.42873e-05
AFFX-BioB-M_at 10691.2 P 4.42873e-05
AFFX-BioB-3_at 8649.79 P 4.42873e-05
AFFX-BioC-5_at 20223.5 P 4.42873e-05
AFFX-BioC-3_at 13488.9 P 4.42873e-05
AFFX-BioDn-5_at 41185.7 P 4.42873e-05
AFFX-BioDn-3_at 62183.7 P 4.42873e-05
AFFX-CreX-5_at 126184 P 5.16732e-05
AFFX-CreX-3_at 116206 P 4.42873e-05
AFFX-DapX-5_at 69.6161 P 0.0284573
AFFX-DapX-M_at 16.4081 A 0.783476
AFFX-DapX-3_at 5.17382 A 0.891021
AFFX-LysX-5_at 58.8787 A 0.250796
AFFX-LysX-M_at 30.8498 A 0.354453
AFFX-LysX-3_at 26.067 A 0.574038
AFFX-PheX-5_at 11.2174 A 0.843268
AFFX-PheX-M_at 7.75794 A 0.804754
AFFX-PheX-3_at 87.9954 A 0.185131
AFFX-ThrX-5_at 79.694 A 0.250796
AFFX-ThrX-M_at 2.9737 A 0.987453

Total number of rows: 54675

Table truncated, full table size 1659 Kbytes.




Supplementary file Size Download File type/resource
GSM702362.CEL.gz 4.9 Mb (ftp)(http) CEL
GSM702362.CHP.gz 293.5 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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