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Sample GSM702365 Query DataSets for GSM702365
Status Public on Feb 21, 2012
Title T2_Post_Male_Young (81372)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Young
gender: Male
training state: Untrained
time point: 4hrs post exercise
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81372_AGEX_YM_T2_4_H133+.CHP
EA08017_81372_AGEX_YM_T2_4_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 5977.08 P 4.42873e-05
AFFX-BioB-M_at 11271.2 P 4.42873e-05
AFFX-BioB-3_at 8350.83 P 4.42873e-05
AFFX-BioC-5_at 19798 P 4.42873e-05
AFFX-BioC-3_at 13152.8 P 4.42873e-05
AFFX-BioDn-5_at 41474.9 P 4.42873e-05
AFFX-BioDn-3_at 63438.1 P 4.42873e-05
AFFX-CreX-5_at 125010 P 5.16732e-05
AFFX-CreX-3_at 114805 P 4.42873e-05
AFFX-DapX-5_at 42.5461 M 0.0542134
AFFX-DapX-M_at 5.6001 A 0.945787
AFFX-DapX-3_at 6.13588 A 0.921998
AFFX-LysX-5_at 4.89542 A 0.659339
AFFX-LysX-M_at 65.4202 A 0.0894781
AFFX-LysX-3_at 6.22938 A 0.672921
AFFX-PheX-5_at 10.6429 A 0.559354
AFFX-PheX-M_at 4.99858 A 0.876448
AFFX-PheX-3_at 24.8149 A 0.574038
AFFX-ThrX-5_at 22.8971 A 0.645547
AFFX-ThrX-M_at 8.28006 A 0.824672

Total number of rows: 54675

Table truncated, full table size 1659 Kbytes.




Supplementary file Size Download File type/resource
GSM702365.CEL.gz 4.9 Mb (ftp)(http) CEL
GSM702365.CHP.gz 295.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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