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Sample GSM702368 Query DataSets for GSM702368
Status Public on Feb 21, 2012
Title T2_Post_Male_Young (81410)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Young
gender: Male
training state: Untrained
time point: 4hrs post exercise
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81410_AGEX_YM_T2_14_H133+.CHP
EA08017_81410_AGEX_YM_T2_14_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 7036.82 P 4.42873e-05
AFFX-BioB-M_at 12813.1 P 4.42873e-05
AFFX-BioB-3_at 9485.76 P 4.42873e-05
AFFX-BioC-5_at 23120.2 P 4.42873e-05
AFFX-BioC-3_at 15784.5 P 4.42873e-05
AFFX-BioDn-5_at 50545.6 P 4.42873e-05
AFFX-BioDn-3_at 76703.5 P 4.42873e-05
AFFX-CreX-5_at 163320 P 4.42873e-05
AFFX-CreX-3_at 145986 P 4.42873e-05
AFFX-DapX-5_at 7.65593 A 0.574044
AFFX-DapX-M_at 4.42779 A 0.969024
AFFX-DapX-3_at 10.9882 A 0.804734
AFFX-LysX-5_at 27.3658 A 0.275146
AFFX-LysX-M_at 29.7541 A 0.470238
AFFX-LysX-3_at 27.8293 A 0.603089
AFFX-PheX-5_at 6.61094 A 0.973889
AFFX-PheX-M_at 8.10708 A 0.883887
AFFX-PheX-3_at 31.0883 A 0.368438
AFFX-ThrX-5_at 12.1467 A 0.749204
AFFX-ThrX-M_at 8.75728 A 0.824693

Total number of rows: 54675

Table truncated, full table size 1653 Kbytes.




Supplementary file Size Download File type/resource
GSM702368.CEL.gz 4.7 Mb (ftp)(http) CEL
GSM702368.CHP.gz 298.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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