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Sample GSM702375 Query DataSets for GSM702375
Status Public on Feb 21, 2012
Title T3_Pre_Male_Young (81392)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Young
gender: Male
training state: Trained
time point: Basal
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81392_AGEX_YM_T3_9_H133+.CHP
EA08017_81392_AGEX_YM_T3_9_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 7590.44 P 4.42873e-05
AFFX-BioB-M_at 13756.3 P 4.42873e-05
AFFX-BioB-3_at 10327.1 P 4.42873e-05
AFFX-BioC-5_at 24091.5 P 4.42873e-05
AFFX-BioC-3_at 18053.5 P 4.42873e-05
AFFX-BioDn-5_at 48960.3 P 4.42873e-05
AFFX-BioDn-3_at 65384.3 P 4.42873e-05
AFFX-CreX-5_at 134317 P 5.16732e-05
AFFX-CreX-3_at 131365 P 4.42873e-05
AFFX-DapX-5_at 65.8988 A 0.083592
AFFX-DapX-M_at 6.01724 A 0.876428
AFFX-DapX-3_at 52.9215 A 0.574038
AFFX-LysX-5_at 26.9217 A 0.327065
AFFX-LysX-M_at 70.9246 P 0.00448081
AFFX-LysX-3_at 46.0175 A 0.15671
AFFX-PheX-5_at 66.4499 A 0.368438
AFFX-PheX-M_at 8.86238 A 0.916408
AFFX-PheX-3_at 10.0001 A 0.617401
AFFX-ThrX-5_at 14.6999 A 0.834139
AFFX-ThrX-M_at 7.21041 A 0.876428

Total number of rows: 54675

Table truncated, full table size 1655 Kbytes.




Supplementary file Size Download File type/resource
GSM702375.CEL.gz 5.0 Mb (ftp)(http) CEL
GSM702375.CHP.gz 292.9 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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