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Sample GSM702382 Query DataSets for GSM702382
Status Public on Feb 21, 2012
Title T4_Post_Male_Young (81380)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Young
gender: Male
training state: Trained
time point: 4hrs post exercise
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81380_AGEX_YM_T4_6_H133+.CHP
EA08017_81380_AGEX_YM_T4_6_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 6084.09 P 4.42873e-05
AFFX-BioB-M_at 11108.8 P 4.42873e-05
AFFX-BioB-3_at 8554.9 P 4.42873e-05
AFFX-BioC-5_at 18817.7 P 5.16732e-05
AFFX-BioC-3_at 15603.4 P 4.42873e-05
AFFX-BioDn-5_at 40120.5 P 4.42873e-05
AFFX-BioDn-3_at 52338.2 P 4.42873e-05
AFFX-CreX-5_at 107731 P 5.16732e-05
AFFX-CreX-3_at 103318 P 4.42873e-05
AFFX-DapX-5_at 46.0034 A 0.195266
AFFX-DapX-M_at 3.75489 A 0.973889
AFFX-DapX-3_at 5.7289 A 0.953518
AFFX-LysX-5_at 9.3744 A 0.559354
AFFX-LysX-M_at 8.48248 A 0.313723
AFFX-LysX-3_at 6.71418 A 0.910522
AFFX-PheX-5_at 6.6947 A 0.631562
AFFX-PheX-M_at 26.267 A 0.645559
AFFX-PheX-3_at 29.2544 A 0.631562
AFFX-ThrX-5_at 7.09612 A 0.794268
AFFX-ThrX-M_at 5.35104 A 0.960339

Total number of rows: 54675

Table truncated, full table size 1662 Kbytes.




Supplementary file Size Download File type/resource
GSM702382.CEL.gz 5.3 Mb (ftp)(http) CEL
GSM702382.CHP.gz 291.9 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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