NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM702384 Query DataSets for GSM702384
Status Public on Feb 21, 2012
Title T4_Post_Male_Young (81411)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Young
gender: Male
training state: Trained
time point: 4hrs post exercise
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81411_AGEX_YM_T4_14_H133+.CHP
EA08017_81411_AGEX_YM_T4_14_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 7070.92 P 4.42873e-05
AFFX-BioB-M_at 13403.2 P 4.42873e-05
AFFX-BioB-3_at 9712.28 P 4.42873e-05
AFFX-BioC-5_at 24055.6 P 4.42873e-05
AFFX-BioC-3_at 17020.2 P 4.42873e-05
AFFX-BioDn-5_at 51605 P 4.42873e-05
AFFX-BioDn-3_at 75417.1 P 4.42873e-05
AFFX-CreX-5_at 164304 P 4.42873e-05
AFFX-CreX-3_at 146540 P 4.42873e-05
AFFX-DapX-5_at 49.4331 A 0.175328
AFFX-DapX-M_at 11.2358 A 0.81489
AFFX-DapX-3_at 5.50773 A 0.904352
AFFX-LysX-5_at 5.27647 A 0.686277
AFFX-LysX-M_at 55.2102 A 0.205732
AFFX-LysX-3_at 1.79689 A 0.998899
AFFX-PheX-5_at 9.66394 A 0.544591
AFFX-PheX-M_at 3.55377 A 0.9273
AFFX-PheX-3_at 29.0201 A 0.41138
AFFX-ThrX-5_at 64.1977 A 0.287743
AFFX-ThrX-M_at 2.35898 A 0.98746

Total number of rows: 54675

Table truncated, full table size 1656 Kbytes.




Supplementary file Size Download File type/resource
GSM702384.CEL.gz 4.8 Mb (ftp)(http) CEL
GSM702384.CHP.gz 296.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap