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Sample GSM702386 Query DataSets for GSM702386
Status Public on Feb 21, 2012
Title T4_Post_Male_Young (81431)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Young
gender: Male
training state: Trained
time point: 4hrs post exercise
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81431_AGEX_YM_T4_19_H133+.CHP
EA08017_81431_AGEX_YM_T4_19_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 8979.21 P 4.42873e-05
AFFX-BioB-M_at 16538.9 P 4.42873e-05
AFFX-BioB-3_at 12151.2 P 4.42873e-05
AFFX-BioC-5_at 30741.7 P 4.42873e-05
AFFX-BioC-3_at 20744.1 P 4.42873e-05
AFFX-BioDn-5_at 64064.4 P 4.42873e-05
AFFX-BioDn-3_at 87649.5 P 4.42873e-05
AFFX-CreX-5_at 195830 P 4.42873e-05
AFFX-CreX-3_at 167096 P 4.42873e-05
AFFX-DapX-5_at 65.483 A 0.0835735
AFFX-DapX-M_at 4.15099 A 0.966323
AFFX-DapX-3_at 13.4876 A 0.852061
AFFX-LysX-5_at 43.5726 A 0.39692
AFFX-LysX-M_at 30.0071 A 0.340661
AFFX-LysX-3_at 2.59344 A 0.937071
AFFX-PheX-5_at 4.45866 A 0.922016
AFFX-PheX-M_at 12.3492 A 0.834139
AFFX-PheX-3_at 10.7958 A 0.760937
AFFX-ThrX-5_at 10.4823 A 0.749204
AFFX-ThrX-M_at 19.7054 A 0.659352

Total number of rows: 54675

Table truncated, full table size 1657 Kbytes.




Supplementary file Size Download File type/resource
GSM702386.CEL.gz 4.7 Mb (ftp)(http) CEL
GSM702386.CHP.gz 296.7 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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