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Sample GSM702393 Query DataSets for GSM702393
Status Public on Feb 21, 2012
Title T1_Pre_Male_Old (81436)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Old
gender: Male
training state: Untrained
time point: Basal
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81436_AGEX_OM_T1_20_H133+.CHP
EA08017_81436_AGEX_OM_T1_20_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 6485.45 P 4.42873e-05
AFFX-BioB-M_at 12006.5 P 4.42873e-05
AFFX-BioB-3_at 9232.18 P 4.42873e-05
AFFX-BioC-5_at 21074.1 P 4.42873e-05
AFFX-BioC-3_at 15756.6 P 4.42873e-05
AFFX-BioDn-5_at 46960.9 P 4.42873e-05
AFFX-BioDn-3_at 65754.2 P 4.42873e-05
AFFX-CreX-5_at 137978 P 5.16732e-05
AFFX-CreX-3_at 133217 P 4.42873e-05
AFFX-DapX-5_at 53.2665 A 0.0726999
AFFX-DapX-M_at 22.6943 A 0.699394
AFFX-DapX-3_at 6.89015 A 0.910522
AFFX-LysX-5_at 36.6928 A 0.123572
AFFX-LysX-M_at 36.7207 A 0.287726
AFFX-LysX-3_at 4.49454 A 0.804734
AFFX-PheX-5_at 6.52279 A 0.891021
AFFX-PheX-M_at 7.06146 A 0.794268
AFFX-PheX-3_at 34.1637 A 0.300606
AFFX-ThrX-5_at 6.06629 A 0.969024
AFFX-ThrX-M_at 7.43178 A 0.814869

Total number of rows: 54675

Table truncated, full table size 1658 Kbytes.




Supplementary file Size Download File type/resource
GSM702393.CEL.gz 4.8 Mb (ftp)(http) CEL
GSM702393.CHP.gz 296.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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