NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM702397 Query DataSets for GSM702397
Status Public on Feb 21, 2012
Title T2_Post_Male_Old (81399)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Old
gender: Male
training state: Untrained
time point: 4hrs post exercise
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81399_AGEX_OM_T2_11_H133+.CHP
EA08017_81399_AGEX_OM_T2_11_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 6356.36 P 4.42873e-05
AFFX-BioB-M_at 12362.6 P 4.42873e-05
AFFX-BioB-3_at 8807.58 P 4.42873e-05
AFFX-BioC-5_at 21409.2 P 4.42873e-05
AFFX-BioC-3_at 15937.8 P 4.42873e-05
AFFX-BioDn-5_at 44827.7 P 4.42873e-05
AFFX-BioDn-3_at 59241.4 P 4.42873e-05
AFFX-CreX-5_at 122065 P 5.16732e-05
AFFX-CreX-3_at 118787 P 4.42873e-05
AFFX-DapX-5_at 60.0536 A 0.123572
AFFX-DapX-M_at 17.1179 A 0.868639
AFFX-DapX-3_at 12.2512 A 0.804734
AFFX-LysX-5_at 10.3305 A 0.699394
AFFX-LysX-M_at 35.7043 A 0.39692
AFFX-LysX-3_at 2.03313 A 0.963431
AFFX-PheX-5_at 8.02647 A 0.760937
AFFX-PheX-M_at 11.4544 A 0.843268
AFFX-PheX-3_at 52.2692 A 0.123572
AFFX-ThrX-5_at 12.8494 A 0.824672
AFFX-ThrX-M_at 17.9531 A 0.772364

Total number of rows: 54675

Table truncated, full table size 1656 Kbytes.




Supplementary file Size Download File type/resource
GSM702397.CEL.gz 5.1 Mb (ftp)(http) CEL
GSM702397.CHP.gz 293.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap