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Sample GSM702401 Query DataSets for GSM702401
Status Public on Feb 21, 2012
Title T3_Pre_Male_Old (81363)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Old
gender: Male
training state: Trained
time point: Basal
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81363_AGEX_OM_T3_2_H133+.CHP
EA08017_81363_AGEX_OM_T3_2_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 5652.91 P 4.42873e-05
AFFX-BioB-M_at 10752.4 P 4.42873e-05
AFFX-BioB-3_at 8460.29 P 4.42873e-05
AFFX-BioC-5_at 18540.9 P 4.42873e-05
AFFX-BioC-3_at 13755.2 P 4.42873e-05
AFFX-BioDn-5_at 39484.3 P 4.42873e-05
AFFX-BioDn-3_at 58545.3 P 4.42873e-05
AFFX-CreX-5_at 116185 P 5.16732e-05
AFFX-CreX-3_at 111325 P 4.42873e-05
AFFX-DapX-5_at 5.25855 A 0.440646
AFFX-DapX-M_at 5.20309 A 0.92207
AFFX-DapX-3_at 16.7172 A 0.84329
AFFX-LysX-5_at 65.2592 A 0.0956669
AFFX-LysX-M_at 45.9974 A 0.227636
AFFX-LysX-3_at 5.24739 A 0.843268
AFFX-PheX-5_at 44.7306 A 0.262809
AFFX-PheX-M_at 4.69232 A 0.876428
AFFX-PheX-3_at 23.8633 A 0.340661
AFFX-ThrX-5_at 12.9236 A 0.52976
AFFX-ThrX-M_at 7.0909 A 0.921998

Total number of rows: 54675

Table truncated, full table size 1660 Kbytes.




Supplementary file Size Download File type/resource
GSM702401.CEL.gz 5.1 Mb (ftp)(http) CEL
GSM702401.CHP.gz 291.1 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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