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Sample GSM702408 Query DataSets for GSM702408
Status Public on Feb 21, 2012
Title T4_Post_Male_Old (81376)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Old
gender: Male
training state: Trained
time point: 4hrs post exercise
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81376_AGEX_OM_T4_5_H133+.CHP
EA08017_81376_AGEX_OM_T4_5_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 7148.63 P 4.42873e-05
AFFX-BioB-M_at 12819.5 P 4.42873e-05
AFFX-BioB-3_at 9633.84 P 4.42873e-05
AFFX-BioC-5_at 23209.9 P 4.42873e-05
AFFX-BioC-3_at 16609.2 P 4.42873e-05
AFFX-BioDn-5_at 45920.1 P 4.42873e-05
AFFX-BioDn-3_at 68681.6 P 4.42873e-05
AFFX-CreX-5_at 141256 P 5.16732e-05
AFFX-CreX-3_at 130110 P 4.42873e-05
AFFX-DapX-5_at 4.06352 A 0.737173
AFFX-DapX-M_at 12.2253 A 0.843268
AFFX-DapX-3_at 14.6166 A 0.645559
AFFX-LysX-5_at 16.7182 A 0.631562
AFFX-LysX-M_at 35.4891 A 0.216524
AFFX-LysX-3_at 3.58885 A 0.941556
AFFX-PheX-5_at 34.0027 A 0.147939
AFFX-PheX-M_at 5.22605 A 0.986189
AFFX-PheX-3_at 45.6117 A 0.41138
AFFX-ThrX-5_at 53.045 P 0.0309764
AFFX-ThrX-M_at 6.22 A 0.897835

Total number of rows: 54675

Table truncated, full table size 1654 Kbytes.




Supplementary file Size Download File type/resource
GSM702408.CEL.gz 5.0 Mb (ftp)(http) CEL
GSM702408.CHP.gz 294.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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