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Sample GSM702410 Query DataSets for GSM702410
Status Public on Feb 21, 2012
Title T4_Post_Male_Old (81417)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Old
gender: Male
training state: Trained
time point: 4hrs post exercise
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81417_AGEX_OM_T4_15_H133+.CHP
EA08017_81417_AGEX_OM_T4_15_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 5725.63 P 4.42873e-05
AFFX-BioB-M_at 10620.3 P 4.42873e-05
AFFX-BioB-3_at 8190.85 P 4.42873e-05
AFFX-BioC-5_at 19181.3 P 4.42873e-05
AFFX-BioC-3_at 13230.4 P 4.42873e-05
AFFX-BioDn-5_at 41093.4 P 4.42873e-05
AFFX-BioDn-3_at 59474.2 P 4.42873e-05
AFFX-CreX-5_at 121394 P 5.16732e-05
AFFX-CreX-3_at 116223 P 4.42873e-05
AFFX-DapX-5_at 29.7455 A 0.250796
AFFX-DapX-M_at 1.20488 A 0.99679
AFFX-DapX-3_at 5.59165 A 0.969024
AFFX-LysX-5_at 27.5585 A 0.156732
AFFX-LysX-M_at 55.5016 M 0.050229
AFFX-LysX-3_at 12.0669 A 0.559354
AFFX-PheX-5_at 29.7789 A 0.382599
AFFX-PheX-M_at 28.9396 A 0.631562
AFFX-PheX-3_at 42.9765 A 0.156732
AFFX-ThrX-5_at 6.8339 A 0.957038
AFFX-ThrX-M_at 25.5676 A 0.340648

Total number of rows: 54675

Table truncated, full table size 1663 Kbytes.




Supplementary file Size Download File type/resource
GSM702410.CEL.gz 5.0 Mb (ftp)(http) CEL
GSM702410.CHP.gz 293.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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