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Sample GSM702413 Query DataSets for GSM702413
Status Public on Feb 21, 2012
Title T1_Pre_Female_Young (81366)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Young
gender: Female
training state: Untrained
time point: Basal
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81366_AGEX_YF_T1_3_H133+.CHP
EA08017_81366_AGEX_YF_T1_3_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 7468.36 P 4.42873e-05
AFFX-BioB-M_at 13937.1 P 4.42873e-05
AFFX-BioB-3_at 10190.6 P 4.42873e-05
AFFX-BioC-5_at 22884.4 P 4.42873e-05
AFFX-BioC-3_at 17289.6 P 4.42873e-05
AFFX-BioDn-5_at 47232.8 P 4.42873e-05
AFFX-BioDn-3_at 67461.7 P 4.42873e-05
AFFX-CreX-5_at 133154 P 5.16732e-05
AFFX-CreX-3_at 132381 P 4.42873e-05
AFFX-DapX-5_at 58.8179 A 0.185131
AFFX-DapX-M_at 7.70938 A 0.916408
AFFX-DapX-3_at 7.31439 A 0.937087
AFFX-LysX-5_at 10.9883 A 0.686277
AFFX-LysX-M_at 36.5009 A 0.51489
AFFX-LysX-3_at 5.08488 A 0.712257
AFFX-PheX-5_at 9.75202 A 0.760937
AFFX-PheX-M_at 2.60665 A 0.979978
AFFX-PheX-3_at 40.4618 A 0.205732
AFFX-ThrX-5_at 68.0362 A 0.123552
AFFX-ThrX-M_at 4.27547 A 0.945787

Total number of rows: 54675

Table truncated, full table size 1656 Kbytes.




Supplementary file Size Download File type/resource
GSM702413.CEL.gz 5.0 Mb (ftp)(http) CEL
GSM702413.CHP.gz 294.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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