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Sample GSM702415 Query DataSets for GSM702415
Status Public on Feb 21, 2012
Title T1_Pre_Female_Young (81397)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Young
gender: Female
training state: Untrained
time point: Basal
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81397_AGEX_YF_T1_10_H133+.CHP
EA08017_81397_AGEX_YF_T1_10_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 7259.19 P 4.42873e-05
AFFX-BioB-M_at 12966.3 P 4.42873e-05
AFFX-BioB-3_at 9768.69 P 4.42873e-05
AFFX-BioC-5_at 24582.7 P 4.42873e-05
AFFX-BioC-3_at 17903.4 P 4.42873e-05
AFFX-BioDn-5_at 52059.9 P 4.42873e-05
AFFX-BioDn-3_at 73419 P 4.42873e-05
AFFX-CreX-5_at 157766 P 5.16732e-05
AFFX-CreX-3_at 136703 P 4.42873e-05
AFFX-DapX-5_at 47.4708 A 0.262827
AFFX-DapX-M_at 10.9956 A 0.794268
AFFX-DapX-3_at 5.53985 A 0.963431
AFFX-LysX-5_at 6.07641 A 0.783476
AFFX-LysX-M_at 60.5401 A 0.15671
AFFX-LysX-3_at 2.71604 A 0.941716
AFFX-PheX-5_at 8.39816 A 0.737173
AFFX-PheX-M_at 36.5434 A 0.60308
AFFX-PheX-3_at 13.8467 A 0.659339
AFFX-ThrX-5_at 31.4461 A 0.5
AFFX-ThrX-M_at 5.44775 A 0.981719

Total number of rows: 54675

Table truncated, full table size 1656 Kbytes.




Supplementary file Size Download File type/resource
GSM702415.CEL.gz 4.9 Mb (ftp)(http) CEL
GSM702415.CHP.gz 296.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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