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Sample GSM702416 Query DataSets for GSM702416
Status Public on Feb 21, 2012
Title T1_Pre_Female_Young (81407)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Young
gender: Female
training state: Untrained
time point: Basal
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81407_AGEX_YF_T1_13_H133+.CHP
EA08017_81407_AGEX_YF_T1_13_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 6823.91 P 4.42873e-05
AFFX-BioB-M_at 12143.3 P 4.42873e-05
AFFX-BioB-3_at 9095.88 P 4.42873e-05
AFFX-BioC-5_at 23687.8 P 4.42873e-05
AFFX-BioC-3_at 15487.3 P 4.42873e-05
AFFX-BioDn-5_at 50054.4 P 4.42873e-05
AFFX-BioDn-3_at 67026.2 P 4.42873e-05
AFFX-CreX-5_at 163393 P 4.42873e-05
AFFX-CreX-3_at 141381 P 4.42873e-05
AFFX-DapX-5_at 2.8977 A 0.783476
AFFX-DapX-M_at 7.29613 A 0.932322
AFFX-DapX-3_at 6.71478 A 0.868639
AFFX-LysX-5_at 26.2338 A 0.411365
AFFX-LysX-M_at 29.6084 A 0.108979
AFFX-LysX-3_at 32.1203 A 0.250758
AFFX-PheX-5_at 16.6372 A 0.5
AFFX-PheX-M_at 58.6595 A 0.262827
AFFX-PheX-3_at 67.4665 M 0.0629293
AFFX-ThrX-5_at 6.52437 A 0.891021
AFFX-ThrX-M_at 2.78534 A 0.941556

Total number of rows: 54675

Table truncated, full table size 1660 Kbytes.




Supplementary file Size Download File type/resource
GSM702416.CEL.gz 4.8 Mb (ftp)(http) CEL
GSM702416.CHP.gz 295.1 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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