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Sample GSM702417 Query DataSets for GSM702417
Status Public on Feb 21, 2012
Title T1_Pre_Female_Young (81443)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Young
gender: Female
training state: Untrained
time point: Basal
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81443_AGEX_YF_T1_22_H133+.CHP
EA08017_81443_AGEX_YF_T1_22_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 6604.76 P 4.42873e-05
AFFX-BioB-M_at 12062.6 P 4.42873e-05
AFFX-BioB-3_at 9232.39 P 4.42873e-05
AFFX-BioC-5_at 21587.2 P 4.42873e-05
AFFX-BioC-3_at 14631.1 P 4.42873e-05
AFFX-BioDn-5_at 44888.7 P 4.42873e-05
AFFX-BioDn-3_at 60875.6 P 4.42873e-05
AFFX-CreX-5_at 126600 P 5.16732e-05
AFFX-CreX-3_at 118766 P 4.42873e-05
AFFX-DapX-5_at 55.1714 A 0.139482
AFFX-DapX-M_at 5.32263 A 0.945787
AFFX-DapX-3_at 47.4999 A 0.617401
AFFX-LysX-5_at 24.9452 A 0.262827
AFFX-LysX-M_at 42.4316 A 0.227636
AFFX-LysX-3_at 4.17184 A 0.749204
AFFX-PheX-5_at 34.1796 A 0.760937
AFFX-PheX-M_at 2.37369 A 0.993813
AFFX-PheX-3_at 53.064 A 0.354453
AFFX-ThrX-5_at 24.7795 A 0.5
AFFX-ThrX-M_at 6.53115 A 0.699394

Total number of rows: 54675

Table truncated, full table size 1658 Kbytes.




Supplementary file Size Download File type/resource
GSM702417.CEL.gz 5.0 Mb (ftp)(http) CEL
GSM702417.CHP.gz 294.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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