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Sample GSM702424 Query DataSets for GSM702424
Status Public on Feb 21, 2012
Title T2_Post_Female_Young (81420)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Young
gender: Female
training state: Untrained
time point: 4hrs post exercise
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81420_AGEX_YF_T2_16_H133+.CHP
EA08017_81420_AGEX_YF_T2_16_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 6277.56 P 4.42873e-05
AFFX-BioB-M_at 11792.6 P 4.42873e-05
AFFX-BioB-3_at 9311.1 P 4.42873e-05
AFFX-BioC-5_at 20275.7 P 4.42873e-05
AFFX-BioC-3_at 14595 P 4.42873e-05
AFFX-BioDn-5_at 44399.7 P 4.42873e-05
AFFX-BioDn-3_at 60799.8 P 4.42873e-05
AFFX-CreX-5_at 123124 P 5.16732e-05
AFFX-CreX-3_at 121476 P 4.42873e-05
AFFX-DapX-5_at 17.2517 A 0.485109
AFFX-DapX-M_at 9.45407 A 0.83416
AFFX-DapX-3_at 42.4387 A 0.239063
AFFX-LysX-5_at 4.65976 A 0.772364
AFFX-LysX-M_at 36.9513 A 0.227636
AFFX-LysX-3_at 27.0619 A 0.287743
AFFX-PheX-5_at 67.9384 A 0.287743
AFFX-PheX-M_at 5.44665 A 0.957038
AFFX-PheX-3_at 67.969 A 0.0780018
AFFX-ThrX-5_at 22.4487 A 0.48511
AFFX-ThrX-M_at 37.8119 A 0.354453

Total number of rows: 54675

Table truncated, full table size 1657 Kbytes.




Supplementary file Size Download File type/resource
GSM702424.CEL.gz 5.0 Mb (ftp)(http) CEL
GSM702424.CHP.gz 295.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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