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Sample GSM702425 Query DataSets for GSM702425
Status Public on Feb 21, 2012
Title T2_Post_Female_Young (81445)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Young
gender: Female
training state: Untrained
time point: 4hrs post exercise
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81445_AGEX_YF_T2_22_H133+.CHP
EA08017_81445_AGEX_YF_T2_22_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 6984.42 P 4.42873e-05
AFFX-BioB-M_at 13464.3 P 4.42873e-05
AFFX-BioB-3_at 10777.9 P 4.42873e-05
AFFX-BioC-5_at 23677.1 P 4.42873e-05
AFFX-BioC-3_at 16042 P 4.42873e-05
AFFX-BioDn-5_at 51162.1 P 4.42873e-05
AFFX-BioDn-3_at 70939.2 P 4.42873e-05
AFFX-CreX-5_at 143548 P 5.16732e-05
AFFX-CreX-3_at 133335 P 4.42873e-05
AFFX-DapX-5_at 54.4365 A 0.108979
AFFX-DapX-M_at 5.85568 A 0.976071
AFFX-DapX-3_at 5.21029 A 0.814869
AFFX-LysX-5_at 19.8678 A 0.574044
AFFX-LysX-M_at 59.7804 A 0.227636
AFFX-LysX-3_at 11.6348 A 0.58862
AFFX-PheX-5_at 61.8807 A 0.250796
AFFX-PheX-M_at 6.37539 A 0.852061
AFFX-PheX-3_at 56.7609 M 0.0629293
AFFX-ThrX-5_at 19.356 A 0.794268
AFFX-ThrX-M_at 1.71425 A 0.998898

Total number of rows: 54675

Table truncated, full table size 1656 Kbytes.




Supplementary file Size Download File type/resource
GSM702425.CEL.gz 4.9 Mb (ftp)(http) CEL
GSM702425.CHP.gz 295.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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