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Sample GSM702440 Query DataSets for GSM702440
Status Public on Feb 21, 2012
Title T4_Post_Female_Young (81444)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Young
gender: Female
training state: Trained
time point: 4hrs post exercise
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81444_AGEX_YF_T4_22_H133+.CHP
EA08017_81444_AGEX_YF_T4_22_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 5358.65 P 4.42873e-05
AFFX-BioB-M_at 10491.7 P 4.42873e-05
AFFX-BioB-3_at 7743.66 P 4.42873e-05
AFFX-BioC-5_at 17925.6 P 4.42873e-05
AFFX-BioC-3_at 12729.3 P 4.42873e-05
AFFX-BioDn-5_at 39350.7 P 4.42873e-05
AFFX-BioDn-3_at 50636.8 P 4.42873e-05
AFFX-CreX-5_at 108905 P 5.16732e-05
AFFX-CreX-3_at 104858 P 4.42873e-05
AFFX-DapX-5_at 44.901 A 0.287743
AFFX-DapX-M_at 9.79258 A 0.979978
AFFX-DapX-3_at 26.9706 A 0.712257
AFFX-LysX-5_at 7.90767 A 0.9273
AFFX-LysX-M_at 8.43555 A 0.686277
AFFX-LysX-3_at 14.9106 A 0.876428
AFFX-PheX-5_at 10.4343 A 0.960339
AFFX-PheX-M_at 8.21892 A 0.937071
AFFX-PheX-3_at 82.5696 P 0.0336773
AFFX-ThrX-5_at 11.2801 A 0.860518
AFFX-ThrX-M_at 26.1362 A 0.659339

Total number of rows: 54675

Table truncated, full table size 1655 Kbytes.




Supplementary file Size Download File type/resource
GSM702440.CEL.gz 5.2 Mb (ftp)(http) CEL
GSM702440.CHP.gz 292.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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