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Sample GSM702448 Query DataSets for GSM702448
Status Public on Feb 21, 2012
Title T1_Pre_Female_Old (81446)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Old
gender: Female
training state: Untrained
time point: Basal
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81446_AGEX_OF_T1_23_H133+.CHP
EA08017_81446_AGEX_OF_T1_23_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 5938.26 P 4.42873e-05
AFFX-BioB-M_at 11113.2 P 4.42873e-05
AFFX-BioB-3_at 8315.48 P 4.42873e-05
AFFX-BioC-5_at 20747.9 P 4.42873e-05
AFFX-BioC-3_at 14398.8 P 4.42873e-05
AFFX-BioDn-5_at 43962 P 4.42873e-05
AFFX-BioDn-3_at 63006.1 P 4.42873e-05
AFFX-CreX-5_at 128468 P 5.16732e-05
AFFX-CreX-3_at 119347 P 4.42873e-05
AFFX-DapX-5_at 9.33275 A 0.672921
AFFX-DapX-M_at 2.59742 A 0.997727
AFFX-DapX-3_at 8.33394 A 0.897855
AFFX-LysX-5_at 14.8233 A 0.559359
AFFX-LysX-M_at 12.0282 A 0.794268
AFFX-LysX-3_at 23.7786 A 0.340661
AFFX-PheX-5_at 5.18832 A 0.783476
AFFX-PheX-M_at 1.31062 A 0.991564
AFFX-PheX-3_at 43.741 A 0.0835735
AFFX-ThrX-5_at 31.9858 A 0.165861
AFFX-ThrX-M_at 7.24548 A 0.760937

Total number of rows: 54675

Table truncated, full table size 1656 Kbytes.




Supplementary file Size Download File type/resource
GSM702448.CEL.gz 4.9 Mb (ftp)(http) CEL
GSM702448.CHP.gz 296.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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