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Sample GSM702461 Query DataSets for GSM702461
Status Public on Feb 21, 2012
Title T4_Post_Female_Old (81361)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Old
gender: Female
training state: Trained
time point: 4hrs post exercise
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81361_AGEX_OF_T4_1_H133+.CHP
EA08017_81361_AGEX_OF_T4_1_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 5945.35 P 4.42873e-05
AFFX-BioB-M_at 11806.4 P 4.42873e-05
AFFX-BioB-3_at 8858.88 P 4.42873e-05
AFFX-BioC-5_at 20537.6 P 4.42873e-05
AFFX-BioC-3_at 14293 P 4.42873e-05
AFFX-BioDn-5_at 42861.8 P 4.42873e-05
AFFX-BioDn-3_at 59813.6 P 4.42873e-05
AFFX-CreX-5_at 125678 P 5.16732e-05
AFFX-CreX-3_at 118228 P 4.42873e-05
AFFX-DapX-5_at 37.1347 A 0.396884
AFFX-DapX-M_at 5.46016 A 0.966323
AFFX-DapX-3_at 37.3453 A 0.227636
AFFX-LysX-5_at 20.1225 A 0.411373
AFFX-LysX-M_at 35.5261 A 0.382589
AFFX-LysX-3_at 3.79694 A 0.897835
AFFX-PheX-5_at 43.6974 A 0.425956
AFFX-PheX-M_at 14.6532 A 0.712257
AFFX-PheX-3_at 47.9308 A 0.131361
AFFX-ThrX-5_at 42.45 A 0.327079
AFFX-ThrX-M_at 2.67846 A 0.963431

Total number of rows: 54675

Table truncated, full table size 1662 Kbytes.




Supplementary file Size Download File type/resource
GSM702461.CEL.gz 5.1 Mb (ftp)(http) CEL
GSM702461.CHP.gz 293.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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