NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM702462 Query DataSets for GSM702462
Status Public on Feb 21, 2012
Title T4_Post_Female_Old (81383)
Sample type RNA
 
Source name Vastus lateralis muscle
Organism Homo sapiens
Characteristics age: Old
gender: Female
training state: Trained
time point: 4hrs post exercise
tissue: Vastus lateralis muscle
Extracted molecule total RNA
Extraction protocol Homogenize the muscle tissue in TRI reagent and extracted RNA according to manufacturer's protocol, and then purified using Rneasy Micro Kit (Qiagen).
Label biotin
Label protocol 40ng of total RNA was labeled using NuGen WT-Ovation RNA Amp v2 kit and protocol
 
Hybridization protocol Affymetrix Fluidics Station 400
Scan protocol Affymetrix GeneChip Scanner 3000 7G
Description EA08017_81383_AGEX_OF_T4_7_H133+.CHP
EA08017_81383_AGEX_OF_T4_7_H133+.CEL
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1500.
 
Submission date Apr 06, 2011
Last update date Feb 21, 2012
Contact name Shawn T. Estrem
Organization name Eli Lilly and Company
Street address Lilly Corporate Center
City Indianapolis
ZIP/Postal code 46285
Country USA
 
Platform ID GPL570
Series (1)
GSE28422 Effects of resistance exercise and resistance training on the skeletal muscle transcriptome in young and old adults

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 7372.72 P 4.42873e-05
AFFX-BioB-M_at 13967.1 P 4.42873e-05
AFFX-BioB-3_at 11126.2 P 4.42873e-05
AFFX-BioC-5_at 23731.8 P 4.42873e-05
AFFX-BioC-3_at 18093.6 P 4.42873e-05
AFFX-BioDn-5_at 49122.3 P 4.42873e-05
AFFX-BioDn-3_at 66414.3 P 4.42873e-05
AFFX-CreX-5_at 133056 P 5.16732e-05
AFFX-CreX-3_at 127935 P 4.42873e-05
AFFX-DapX-5_at 18.028 A 0.455413
AFFX-DapX-M_at 3.08916 A 0.997977
AFFX-DapX-3_at 8.73977 A 0.916408
AFFX-LysX-5_at 2.819 A 0.910522
AFFX-LysX-M_at 9.50832 A 0.659339
AFFX-LysX-3_at 2.95674 A 0.971543
AFFX-PheX-5_at 6.95976 A 0.760937
AFFX-PheX-M_at 6.6245 A 0.868639
AFFX-PheX-3_at 39.4068 A 0.425962
AFFX-ThrX-5_at 3.34912 A 0.910598
AFFX-ThrX-M_at 2.3465 A 0.993813

Total number of rows: 54675

Table truncated, full table size 1660 Kbytes.




Supplementary file Size Download File type/resource
GSM702462.CEL.gz 4.9 Mb (ftp)(http) CEL
GSM702462.CHP.gz 295.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap