|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Aug 25, 2005 |
Title |
Morex stress and unstress replicate 1 |
Sample type |
RNA |
|
|
Source name |
whole seedling
|
Organism |
Hordeum vulgare |
Characteristics |
cv. Morex drought stress and unstressed
|
Extracted molecule |
total RNA |
Extraction protocol |
Five seedlings were used for RNA extraction
|
Label |
biotin
|
Label protocol |
Approximately 8 µg of total RNA was processed to produce biotinylated cRNA targets.
|
|
|
Hybridization protocol |
standard Affymetrix procedures
|
Scan protocol |
standard Affymetrix procedures
|
Description |
drought stress and unstressed
|
Data processing |
GCOS 1.2
|
|
|
Submission date |
Aug 19, 2005 |
Last update date |
Aug 25, 2005 |
Contact name |
xinping cui |
E-mail(s) |
xinping.cui@ucr.edu
|
Phone |
9518272563
|
Fax |
9518273286
|
Organization name |
University of California,Riverside
|
Department |
Statistics
|
Street address |
Department of Statistics, University of California, Riverside
|
City |
Riverside |
State/province |
CA |
ZIP/Postal code |
92521 |
Country |
USA |
|
|
Platform ID |
GPL1340 |
Series (1) |
GSE3170 |
Barley single feature polymorphisms and drought stress gene expression |
|
Data table header descriptions |
ID_REF |
|
VALUE |
GCOS1.2-calculated Signal intensity |
ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
DETECTION P-VALUE |
'detection p-value', p-value that indicates the significance level of the detection call |
Data table |
ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
AFFX-BioB-5_at |
152.6 |
P |
0.009337 |
AFFX-BioB-M_at |
128.1 |
P |
0.000258 |
AFFX-BioB-3_at |
93.9 |
P |
0.004484 |
AFFX-BioC-5_at |
224.4 |
P |
0.000095 |
AFFX-BioC-3_at |
244.5 |
P |
0.000169 |
AFFX-BioDn-5_at |
805.2 |
P |
0.000044 |
AFFX-BioDn-3_at |
2324.6 |
P |
0.00007 |
AFFX-CreX-5_at |
3498.1 |
P |
0.000044 |
AFFX-CreX-3_at |
6218.6 |
P |
0.000044 |
AFFX-DapX-5_at |
285.9 |
P |
0.00011 |
AFFX-DapX-M_at |
986.7 |
P |
0.00011 |
AFFX-DapX-3_at |
2212.2 |
P |
0.000044 |
AFFX-LysX-5_at |
98.8 |
P |
0.00141 |
AFFX-LysX-M_at |
189 |
P |
0.005565 |
AFFX-LysX-3_at |
407.7 |
P |
0.000095 |
AFFX-PheX-5_at |
113.8 |
P |
0.000446 |
AFFX-PheX-M_at |
95.1 |
P |
0.001796 |
AFFX-PheX-3_at |
247.2 |
P |
0.00006 |
AFFX-ThrX-5_at |
105.5 |
P |
0.004484 |
AFFX-ThrX-M_at |
242.9 |
P |
0.00006 |
Total number of rows: 22840
Table truncated, full table size 705 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM71154.CEL.gz |
3.4 Mb |
(ftp)(http) |
CEL |
|
|
|
|
|