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GEO accession:
Sample GSM71702
Query DataSets for GSM71702
Status
Public on Aug 25, 2005
Title
465MM
Sample type
RNA
Source name
skin
Organism
Homo sapiens
Characteristics
Melanoma
Extracted molecule
total RNA
Extraction protocol
Total RNA was isolated from skin, nevus and melanoma samples according to Standard Trizol protocol or Qiagen RNeasy Mini Kit protocol.
Label
biotin
Label protocol
Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Melanoma
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Aug 24, 2005
Last update date
Aug 24, 2005
Contact name
Tim Jatkoe
E-mail(s)
tjatkoe@vrxus.jnj.com
Phone
(858) 320-3315
Organization name
Veridex
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL96
Series (1)
GSE3189
Novel genes associated with malignant melanoma but not benign melanocytic lesions
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity after global scaling the average intensity to 600.
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
787.8
P
0.005565
AFFX-BioB-M_at
1484.5
P
0.000581
AFFX-BioB-3_at
673.9
P
0.003212
AFFX-BioC-5_at
2295.4
P
0.000169
AFFX-BioC-3_at
1466
P
0.000095
AFFX-BioDn-5_at
1444.3
P
0.000581
AFFX-BioDn-3_at
10931.5
P
0.000127
AFFX-CreX-5_at
18753.1
P
0.000044
AFFX-CreX-3_at
30167.2
P
0.000044
AFFX-DapX-5_at
80.5
A
0.470241
AFFX-DapX-M_at
25.8
A
0.672921
AFFX-DapX-3_at
27.8
A
0.916408
AFFX-LysX-5_at
177.9
A
0.227636
AFFX-LysX-M_at
52.7
A
0.737173
AFFX-LysX-3_at
337.5
P
0.000857
AFFX-PheX-5_at
182.1
A
0.078002
AFFX-PheX-M_at
339.6
P
0.01667
AFFX-PheX-3_at
980.5
P
0.000581
AFFX-ThrX-5_at
217.2
A
0.227636
AFFX-ThrX-M_at
273
A
0.123572
Total number of rows:
22283
Table truncated, full table size
596 Kbytes
.
Supplementary data files not provided
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