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GEO accession:
Sample GSM71704
Query DataSets for GSM71704
Status
Public on Aug 25, 2005
Title
468MM
Sample type
RNA
Source name
skin
Organism
Homo sapiens
Characteristics
Melanoma
Extracted molecule
total RNA
Extraction protocol
Total RNA was isolated from skin, nevus and melanoma samples according to Standard Trizol protocol or Qiagen RNeasy Mini Kit protocol.
Label
biotin
Label protocol
Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Melanoma
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Aug 24, 2005
Last update date
Aug 24, 2005
Contact name
Tim Jatkoe
E-mail(s)
tjatkoe@vrxus.jnj.com
Phone
(858) 320-3315
Organization name
Veridex
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL96
Series (1)
GSE3189
Novel genes associated with malignant melanoma but not benign melanocytic lesions
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity after global scaling the average intensity to 600.
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
460.3
P
0.018281
AFFX-BioB-M_at
1022.7
P
0.003212
AFFX-BioB-3_at
580.3
P
0.023929
AFFX-BioC-5_at
1622
P
0.000169
AFFX-BioC-3_at
921.8
P
0.000297
AFFX-BioDn-5_at
1047.5
P
0.003212
AFFX-BioDn-3_at
8520.6
P
0.000169
AFFX-CreX-5_at
12080.1
P
0.000044
AFFX-CreX-3_at
19020.4
P
0.000044
AFFX-DapX-5_at
10.6
A
0.852061
AFFX-DapX-M_at
152.9
A
0.440646
AFFX-DapX-3_at
11.1
A
0.99238
AFFX-LysX-5_at
220.9
M
0.058444
AFFX-LysX-M_at
349
P
0.030976
AFFX-LysX-3_at
735.6
P
0.000127
AFFX-PheX-5_at
427.4
P
0.000662
AFFX-PheX-M_at
753.5
P
0.001796
AFFX-PheX-3_at
1723.5
P
0.00007
AFFX-ThrX-5_at
122.5
A
0.195266
AFFX-ThrX-M_at
410.5
P
0.021902
Total number of rows:
22283
Table truncated, full table size
596 Kbytes
.
Supplementary data files not provided
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