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GEO accession:
Sample GSM71708
Query DataSets for GSM71708
Status
Public on Aug 25, 2005
Title
476MM
Sample type
RNA
Source name
skin
Organism
Homo sapiens
Characteristics
Melanoma
Extracted molecule
total RNA
Extraction protocol
Total RNA was isolated from skin, nevus and melanoma samples according to Standard Trizol protocol or Qiagen RNeasy Mini Kit protocol.
Label
biotin
Label protocol
Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Melanoma
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Aug 24, 2005
Last update date
Aug 24, 2005
Contact name
Tim Jatkoe
E-mail(s)
tjatkoe@vrxus.jnj.com
Phone
(858) 320-3315
Organization name
Veridex
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL96
Series (1)
GSE3189
Novel genes associated with malignant melanoma but not benign melanocytic lesions
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity after global scaling the average intensity to 600.
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
954.4
P
0.002867
AFFX-BioB-M_at
2071.7
P
0.001102
AFFX-BioB-3_at
754.6
P
0.002023
AFFX-BioC-5_at
2649
P
0.00011
AFFX-BioC-3_at
1723.7
P
0.000081
AFFX-BioDn-5_at
1959.5
P
0.000081
AFFX-BioDn-3_at
13075
P
0.000095
AFFX-CreX-5_at
24204.9
P
0.000044
AFFX-CreX-3_at
34928.1
P
0.000044
AFFX-DapX-5_at
27
A
0.645547
AFFX-DapX-M_at
63.2
A
0.58862
AFFX-DapX-3_at
90.1
A
0.783476
AFFX-LysX-5_at
331.4
M
0.050229
AFFX-LysX-M_at
402.4
P
0.042962
AFFX-LysX-3_at
928.5
P
0.00011
AFFX-PheX-5_at
371.8
P
0.000581
AFFX-PheX-M_at
677.5
P
0.00141
AFFX-PheX-3_at
1376
P
0.00011
AFFX-ThrX-5_at
424.4
P
0.002867
AFFX-ThrX-M_at
1291.7
P
0.000127
Total number of rows:
22283
Table truncated, full table size
596 Kbytes
.
Supplementary data files not provided
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