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GEO accession:
Sample GSM71721
Query DataSets for GSM71721
Status
Public on Aug 25, 2005
Title
445MM
Sample type
RNA
Source name
skin
Organism
Homo sapiens
Characteristics
Melanoma
Extracted molecule
total RNA
Extraction protocol
Total RNA was isolated from skin, nevus and melanoma samples according to Standard Trizol protocol or Qiagen RNeasy Mini Kit protocol.
Label
biotin
Label protocol
Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Melanoma
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Aug 24, 2005
Last update date
Aug 24, 2005
Contact name
Tim Jatkoe
E-mail(s)
tjatkoe@vrxus.jnj.com
Phone
(858) 320-3315
Organization name
Veridex
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL96
Series (1)
GSE3189
Novel genes associated with malignant melanoma but not benign melanocytic lesions
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity after global scaling the average intensity to 600.
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
575.2
P
0.002275
AFFX-BioB-M_at
858.3
P
0.00141
AFFX-BioB-3_at
433
P
0.002867
AFFX-BioC-5_at
1195
P
0.000147
AFFX-BioC-3_at
952.8
P
0.000258
AFFX-BioDn-5_at
1394.3
P
0.00011
AFFX-BioDn-3_at
8274.1
P
0.000127
AFFX-CreX-5_at
14191.9
P
0.000044
AFFX-CreX-3_at
22366
P
0.000044
AFFX-DapX-5_at
42.3
A
0.340661
AFFX-DapX-M_at
59.6
A
0.52976
AFFX-DapX-3_at
13.4
A
0.957038
AFFX-LysX-5_at
56.7
A
0.340661
AFFX-LysX-M_at
26.1
A
0.772364
AFFX-LysX-3_at
95.1
A
0.195266
AFFX-PheX-5_at
8.6
A
0.834139
AFFX-PheX-M_at
13.5
A
0.834139
AFFX-PheX-3_at
98.5
A
0.544587
AFFX-ThrX-5_at
20.3
A
0.760937
AFFX-ThrX-M_at
19.3
A
0.852061
Total number of rows:
22283
Table truncated, full table size
596 Kbytes
.
Supplementary data files not provided
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