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GEO accession:
Sample GSM71727
Query DataSets for GSM71727
Status
Public on Aug 25, 2005
Title
452MM
Sample type
RNA
Source name
skin
Organism
Homo sapiens
Characteristics
Melanoma
Extracted molecule
total RNA
Extraction protocol
Total RNA was isolated from skin, nevus and melanoma samples according to Standard Trizol protocol or Qiagen RNeasy Mini Kit protocol.
Label
biotin
Label protocol
Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Melanoma
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Aug 24, 2005
Last update date
Aug 24, 2005
Contact name
Tim Jatkoe
E-mail(s)
tjatkoe@vrxus.jnj.com
Phone
(858) 320-3315
Organization name
Veridex
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL96
Series (1)
GSE3189
Novel genes associated with malignant melanoma but not benign melanocytic lesions
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity after global scaling the average intensity to 600.
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
500.3
P
0.002023
AFFX-BioB-M_at
1254.7
P
0.000195
AFFX-BioB-3_at
420.3
P
0.000509
AFFX-BioC-5_at
1456.2
P
0.000081
AFFX-BioC-3_at
1144.2
P
0.000147
AFFX-BioDn-5_at
1733.3
P
0.00007
AFFX-BioDn-3_at
9784.5
P
0.000081
AFFX-CreX-5_at
15424.9
P
0.000044
AFFX-CreX-3_at
24062.9
P
0.000044
AFFX-DapX-5_at
10
A
0.48511
AFFX-DapX-M_at
80.5
A
0.139482
AFFX-DapX-3_at
17.5
A
0.699394
AFFX-LysX-5_at
10.9
A
0.772364
AFFX-LysX-M_at
12.3
A
0.760937
AFFX-LysX-3_at
26.1
A
0.544587
AFFX-PheX-5_at
6.3
A
0.814869
AFFX-PheX-M_at
8.2
A
0.724854
AFFX-PheX-3_at
27.7
A
0.41138
AFFX-ThrX-5_at
11.5
A
0.852061
AFFX-ThrX-M_at
19.6
A
0.686277
Total number of rows:
22283
Table truncated, full table size
596 Kbytes
.
Supplementary data files not provided
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