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GEO accession:
Sample GSM71738
Query DataSets for GSM71738
Status
Public on Aug 25, 2005
Title
482MM
Sample type
RNA
Source name
skin
Organism
Homo sapiens
Characteristics
Melanoma
Extracted molecule
total RNA
Extraction protocol
Total RNA was isolated from skin, nevus and melanoma samples according to Standard Trizol protocol or Qiagen RNeasy Mini Kit protocol.
Label
biotin
Label protocol
Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Melanoma
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Aug 24, 2005
Last update date
Aug 24, 2005
Contact name
Tim Jatkoe
E-mail(s)
tjatkoe@vrxus.jnj.com
Phone
(858) 320-3315
Organization name
Veridex
Street address
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Platform ID
GPL96
Series (1)
GSE3189
Novel genes associated with malignant melanoma but not benign melanocytic lesions
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity after global scaling the average intensity to 600.
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
910.6
P
0.00141
AFFX-BioB-M_at
1732.5
P
0.000225
AFFX-BioB-3_at
1079.5
P
0.00034
AFFX-BioC-5_at
2488.6
P
0.000095
AFFX-BioC-3_at
1858.3
P
0.000095
AFFX-BioDn-5_at
2870.2
P
0.00006
AFFX-BioDn-3_at
16378.9
P
0.00006
AFFX-CreX-5_at
26890.8
P
0.000044
AFFX-CreX-3_at
38908.3
P
0.000044
AFFX-DapX-5_at
20.4
A
0.559354
AFFX-DapX-M_at
93.5
A
0.58862
AFFX-DapX-3_at
21.4
A
0.783476
AFFX-LysX-5_at
56.8
A
0.574038
AFFX-LysX-M_at
20
A
0.712257
AFFX-LysX-3_at
77.3
A
0.440646
AFFX-PheX-5_at
21.5
A
0.904333
AFFX-PheX-M_at
24
A
0.876428
AFFX-PheX-3_at
171.8
A
0.287743
AFFX-ThrX-5_at
32.4
A
0.631562
AFFX-ThrX-M_at
67.3
A
0.559354
Total number of rows:
22283
Table truncated, full table size
596 Kbytes
.
Supplementary data files not provided
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