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GEO accession:
Sample GSM74060
Query DataSets for GSM74060
Status
Public on Sep 19, 2005
Title
oocyte from primary follicle stage rep1 (430A)
Sample type
RNA
Source name
oocyte
Organism
Mus musculus
Characteristics
in vivo,primary follicle stage, oocyte
Extracted molecule
total RNA
Extraction protocol
90 oocytes were collected from ovary of 6 day old SJLB6 female mouse.Total RNA was extracted and purified using an Picopure kit (Arcturus).
Label
biotin
Label protocol
total RNA from 90 oocytes was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
none provided
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Sep 12, 2005
Last update date
Sep 20, 2005
Contact name
Hua Pan
E-mail(s)
huapan@sas.upenn.edu
Organization name
University of Pennsylvania
Department
Department of Biology
Street address
415 S University Avenue
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platform ID
GPL339
Series (2)
GSE3291
Gene expression in the oocyte at primary follicle stage
GSE3351
Gene expression during oocyte development
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table
ID_REF
VALUE
ABS_CALL
1415670_at
597.4
P
1415671_at
1256.3999
P
1415672_at
3261.4
P
1415673_at
68.600006
A
1415674_a_at
359.55
P
1415675_at
455.8
P
1415676_a_at
2472.2998
P
1415677_at
451.19998
P
1415678_at
1048.9
P
1415679_at
8009.25
P
1415680_at
697.4
P
1415681_at
84.1
P
1415682_at
489.7
P
1415683_at
1951.8501
P
1415684_at
1124.55
P
1415685_at
294.35
P
1415686_at
1210.15
P
1415687_a_at
1065.4501
P
1415688_at
6438.15
P
1415689_s_at
163.7
P
Total number of rows:
22626
Table truncated, full table size
411 Kbytes
.
Supplementary data files not provided
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