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GEO accession:
Sample GSM74062
Query DataSets for GSM74062
Status
Public on Sep 19, 2005
Title
oocyte from primary follicle stage rep3 (430A)
Sample type
RNA
Source name
oocyte
Organism
Mus musculus
Characteristics
in vivo,primary follicle stage, oocyte
Extracted molecule
total RNA
Extraction protocol
90 oocytes were collected from ovary of 6 day old SJLB6 female mouse.Total RNA was extracted and purified using an Picopure kit (Arcturus).
Label
biotin
Label protocol
total RNA from 90 oocytes was processed to produce biotinylated cRNA targets using Affy Small Sample Target Labeling Assay Version II.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
none provided
Data processing
Affymetrix Microarray Suite version 5.0
Submission date
Sep 12, 2005
Last update date
Sep 20, 2005
Contact name
Hua Pan
E-mail(s)
huapan@sas.upenn.edu
Organization name
University of Pennsylvania
Department
Department of Biology
Street address
415 S University Avenue
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platform ID
GPL339
Series (2)
GSE3291
Gene expression in the oocyte at primary follicle stage
GSE3351
Gene expression during oocyte development
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table
ID_REF
VALUE
ABS_CALL
1415670_at
529.35
P
1415671_at
1223.8999
P
1415672_at
2690.4
P
1415673_at
75.5
A
1415674_a_at
348.3
P
1415675_at
413.5
P
1415676_a_at
2226
P
1415677_at
406.8
P
1415678_at
937.55005
P
1415679_at
8034.25
P
1415680_at
702.4
P
1415681_at
251.55002
P
1415682_at
416.2
P
1415683_at
2142.7002
P
1415684_at
1089.8999
P
1415685_at
265.9
P
1415686_at
1017.7001
P
1415687_a_at
994.75
P
1415688_at
5758.55
P
1415689_s_at
143.09999
P
Total number of rows:
22626
Table truncated, full table size
411 Kbytes
.
Supplementary data files not provided
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