|
Status |
Public on Dec 13, 2023 |
Title |
LO3_HN_RHIZO_LEAF_3 |
Sample type |
SRA |
|
|
Source name |
LO3_HN_RHIZO_LEAF_3
|
Organism |
Zea mays |
Characteristics |
genotype: wild type (L03) developmental stage: planting-date=20-JUN-20,harvest-date=28-AUG-20 tissue: leaf
|
Treatment protocol |
no treatment
|
Growth protocol |
clay beads+peat Greenhouse
|
Extracted molecule |
total RNA |
Extraction protocol |
LO3_HN_RHIZO_LEAF_3(5ug) rna_selection:selection polyA, paired-end, stranded:yes, Protocol:PT_Illumina_Stranded_mRNA_Ligation_Prep_Demi-volume_input250ng_B_17-11-2021.docx
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Data processing |
Genome_build: genome of Zeamays+Rhizophagus-irregularis(DAOM197198) genome mapping and counts of reads by gene locus are done with STAR; exact multihits are removed and count only consistent PE reads (in PE case). Supplementary_files_format_and_content: type:count file (txt); content:GeneID,counts_noStranded,counts_forwardStrand,counts_reverseStrand
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|
|
Submission date |
Jun 23, 2023 |
Last update date |
Dec 13, 2023 |
Contact name |
VĂ©ronique BRUNAUD |
E-mail(s) |
veronique.brunaud@inrae.fr
|
Organization name |
INRA - CNRS - UPSUD
|
Lab |
IPS2
|
Street address |
rue Noetzlin
|
City |
Gif-sur-Yvette |
ZIP/Postal code |
91190 |
Country |
France |
|
|
Platform ID |
GPL25410 |
Series (1) |
GSE235654 |
responses of maize to the arbuscular fungus rhizophagus irregularis mitigate n deficiency stress-Physiological and molecular responses of maize to the arbuscular mycorrhizla fungus 5AMF) Rhizophagus irregularis mitigate nitrogen deficiency stress. |
|
Relations |
BioSample |
SAMN35879783 |
SRA |
SRX20761935 |